Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77380 105 / 5e-28 AAP3, ATAAP3 amino acid permease 3 (.1) AT1G44100 100 / 4e-26 AAP5 amino acid permease 5 (.1) AT5G09220 99 / 1e-25 AAP2 amino acid permease 2 (.1) AT5G63850 99 / 3e-25 AAP4 amino acid permease 4 (.1) AT1G58360 77 / 2e-17 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) AT1G10010 77 / 2e-17 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G49630 74 / 1e-16 AAP6 amino acid permease 6 (.1) AT5G23810 68 / 1e-14 AAP7 amino acid permease 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029703 [exp] 131 / 2e-37 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10042741 [exp] 129 / 4e-37 AT1G77380 515 / 0.0 amino acid permease 3 (.1) Lus10042744 [exp] 97 / 5e-25 AT1G77380 667 / 0.0 amino acid permease 3 (.1) Lus10029707 [exp] 97 / 2e-24 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10036777 [exp] 90 / 5e-22 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10028546 [exp] 88 / 2e-21 AT1G77380 552 / 0.0 amino acid permease 3 (.1) Lus10018852 [exp] 88 / 2e-21 AT1G77380 702 / 0.0 amino acid permease 3 (.1) Lus10042740 [exp] 85 / 2e-20 AT1G77380 698 / 0.0 amino acid permease 3 (.1) Lus10037150 [exp] 84 / 5e-20 AT1G77380 680 / 0.0 amino acid permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G100100 [exp] 105 / 1e-27 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.005G068900 [exp] 105 / 1e-27 AT5G09220 799 / 0.0 amino acid permease 2 (.1) Potri.005G181500 [exp] 100 / 1e-25 AT1G77380 728 / 0.0 amino acid permease 3 (.1) Potri.005G181600 [exp] 100 / 1e-25 AT1G77380 746 / 0.0 amino acid permease 3 (.1) Potri.002G079500 [exp] 99 / 2e-25 AT1G77380 766 / 0.0 amino acid permease 3 (.1) Potri.002G079700 [exp] 96 / 2e-24 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.002G079400 [exp] 96 / 3e-24 AT1G77380 765 / 0.0 amino acid permease 3 (.1) Potri.002G080066 [exp] 96 / 4e-24 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.009G133600 [exp] 93 / 2e-23 AT5G09220 711 / 0.0 amino acid permease 2 (.1) Potri.001G470000 [exp] 80 / 1e-18 AT5G23810 570 / 0.0 amino acid permease 7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10024302 pacid=23174981 polypeptide=Lus10024302 locus=Lus10024302.g ID=Lus10024302.BGIv1.0 annot-version=v1.0 ATGATCGGATTTGGAATCGTACATATCTCTCTCCCAAATCCCCAAGTTCGTCGGTTATGGTTGCTCTCCATCGTGGTCGCGGTCATGTCCTTCACTTACT CTGAGATCAAACTAGGTCTCGACATTGCCAAAGTCGCCAAAAACGGAGAAATCAAGGGAACTTCAATTGGAATCACCGTCGGAGCCGTAACTGAGATGCA GAAACTGTGGAGGTTGTTCCAGGCACTCGCTAACATCCCATTAGCATATGCTTACTCCATCATTCTCATCGAACTCCTGGACCTGGATCCGCCGCCACTC CTCCCGCCACTACTCATGGAAGCAACAGTACTGTTGTGA
AA sequence Show only first row Show all	>Lus10024302 pacid=23174981 polypeptide=Lus10024302 locus=Lus10024302.g ID=Lus10024302.BGIv1.0 annot-version=v1.0 MIGFGIVHISLPNPQVRRLWLLSIVVAVMSFTYSEIKLGLDIAKVAKNGEIKGTSIGITVGAVTEMQKLWRLFQALANIPLAYAYSIILIELLDLDPPPL LPPLLMEATVLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10024302 [exp]	0	1
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10010939 [exp]	2.0	0.9445
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	2.2	0.9507
AT5G26250			Major facilitator superfamily ...		Lus10041212 [exp]	3.5	0.9117
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	4.5	0.9288
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10010938 [exp]	4.6	0.9107
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10036596 [exp]	6.2	0.8750
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	6.2	0.9308
					Lus10022721 [exp]	6.3	0.9124
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034505 [exp]	8.5	0.9093
AT3G54490		RPB5E	"RNA polymerase II fifth large...		Lus10039554 [exp]	11.0	0.8460

Compare expression of checked genes

Lus10024302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.