Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29350 251 / 1e-83 SAG13 senescence-associated gene 13 (.1.2.3) AT5G06060 249 / 5e-83 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 246 / 9e-82 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29150 245 / 2e-81 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29320 243 / 1e-80 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29360 240 / 3e-79 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29340 239 / 4e-79 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G29300 238 / 1e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G07450 236 / 9e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29330 234 / 6e-77 TRI tropinone reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010875 [exp] 323 / 4e-112 AT5G06060 146 / 1e-42 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010877 [exp] 282 / 2e-90 AT2G29150 191 / 2e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010873 [exp] 265 / 3e-89 AT5G06060 308 / 2e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 253 / 4e-84 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 250 / 5e-83 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040737 [exp] 247 / 6e-82 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3) Lus10004984 [exp] 243 / 1e-80 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016494 [exp] 241 / 1e-79 AT5G06060 333 / 7e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 241 / 1e-79 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G089700 [exp] 277 / 6e-94 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 254 / 9e-85 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 253 / 2e-84 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G142600 [exp] 251 / 8e-84 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G039500 [exp] 248 / 2e-82 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 245 / 3e-81 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G059100 [exp] 243 / 1e-80 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 239 / 4e-79 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 236 / 7e-77 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 213 / 6e-69 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10024358 pacid=23174889 polypeptide=Lus10024358 locus=Lus10024358.g ID=Lus10024358.BGIv1.0 annot-version=v1.0 ATGGAAGAAGTTGCAGCAGCAGCAGTAGAAGAAGCTAACAATATTGGAGAAATCAACAGGTGGTCTCTGAAGGGTATGAGTGCACTTGTGACCGGAGGAA ACAGAGGAATTGGGTATGCAATTGTTGAGGAACTTTGCAGAAAGGGTGCCAGAGTTCACATATGCTGCCGTGGCCAGGAAGACATCGACCGGAGAATTCA AGAATGGAAAGCCAAAGGGTTTCAAGTCAGCGGCTCTGTCTGCGACTTGACTTCCAGTTCCGAACGCCGGAAGCTCATCGACGCAGTATCCTCTGTTTTT CATGGCTCGCTTAATATCCTCGTCAACAATGCTGGAATCACTTCCTACAACAAATTCCTGAACTGGAGCCCTGAAGATTACTCAAACGTGATGACCACAA ACCTGGAGGCACCTTTCCATCTCTGCCAACTCGCACATCCACTCCTGACAGCATCCGGAAACGGAAGACGGAAATGGAAGCGTCGTGTTCGTCTCCTCAC GGGAATCAACCAATTGACGAAGAACTTGGCGTTCGAATGGGCCAAAGACAACATCCGAGTCAACACCGTCGCTCCTTCTGCAACCAACACCGGGATACTT CCATCGGGTATGGAGGAAGTTACGAAAGACTATGTAGAGGTGTGTAAGAGGATCCCAATCGGTAGAATTGCTGAATCGGACGAGGTGTCACCGTTGGTCG CGTTCCTCTGTATGCCTGCCGCCTCTTACATATCCGGCCAAGTCATTGCCGTTGATGCTGGACTTACAGTTACTGCTGCTTAA
AA sequence Show only first row Show all	>Lus10024358 pacid=23174889 polypeptide=Lus10024358 locus=Lus10024358.g ID=Lus10024358.BGIv1.0 annot-version=v1.0 MEEVAAAAVEEANNIGEINRWSLKGMSALVTGGNRGIGYAIVEELCRKGARVHICCRGQEDIDRRIQEWKAKGFQVSGSVCDLTSSSERRKLIDAVSSVF HGSLNILVNNAGITSYNKFLNWSPEDYSNVMTTNLEAPFHLCQLAHPLLTASGNGRRKWKRRVRLLTGINQLTKNLAFEWAKDNIRVNTVAPSATNTGIL PSGMEEVTKDYVEVCKRIPIGRIAESDEVSPLVAFLCMPAASYISGQVIAVDAGLTVTAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10024358 [exp]	0	1
AT2G23790			Protein of unknown function (D...		Lus10022496 [exp]	5.3	0.9367
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10016204 [exp]	5.7	0.9330
AT5G38760			Late embryogenesis abundant pr...		Lus10003046 [exp]	8.1	0.9297
AT5G14890			NHL domain-containing protein ...		Lus10032160 [exp]	8.4	0.9253
AT1G75810			unknown protein		Lus10034536 [exp]	15.0	0.9197
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10005697 [exp]	15.4	0.9304
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10027045 [exp]	16.0	0.9347
AT1G21400			Thiamin diphosphate-binding fo...		Lus10018945 [exp]	16.1	0.9231
AT2G14095			unknown protein		Lus10025500 [exp]	16.2	0.9249
AT5G20950			Glycosyl hydrolase family prot...		Lus10010656 [exp]	17.9	0.9279

Compare expression of checked genes

Lus10024358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.