Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29290 293 / 5e-100 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29360 292 / 2e-99 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 289 / 2e-98 SAG13 senescence-associated gene 13 (.1.2.3) AT5G06060 289 / 2e-98 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29260 286 / 2e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 284 / 2e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29370 283 / 4e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 276 / 2e-93 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29330 263 / 3e-88 TRI tropinone reductase (.1) AT2G30670 261 / 3e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010874 [exp] 411 / 2e-146 AT5G06060 295 / 8e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024360 [exp] 403 / 1e-143 AT5G06060 287 / 7e-98 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 293 / 3e-100 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004984 [exp] 280 / 5e-95 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010873 [exp] 273 / 3e-92 AT5G06060 308 / 2e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040737 [exp] 272 / 8e-92 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3) Lus10040271 [exp] 270 / 1e-90 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040730 [exp] 267 / 7e-89 AT2G29260 405 / 2e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 265 / 1e-88 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G089800 [exp] 307 / 2e-105 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 296 / 3e-101 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 291 / 2e-99 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G039500 [exp] 287 / 9e-98 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G059100 [exp] 287 / 1e-97 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G142600 [exp] 284 / 2e-96 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G039300 [exp] 283 / 6e-96 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 282 / 1e-94 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 273 / 2e-92 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 247 / 2e-82 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10024359 pacid=23174980 polypeptide=Lus10024359 locus=Lus10024359.g ID=Lus10024359.BGIv1.0 annot-version=v1.0 ATGGCGACAACAGGAAGTACTGATGGTGAGTTTATCAGCAGCAGACATCAAAGGTGGTCTCTTGAAGGAATGAATGCTCTCGTCACCGGTGGAACTCGAG GCATCGGGCATGCGATTGTAGAGGAATTGGCAGAGTTGGGGGTTACAATCCACACTTGTGCTCGCACCCAGACCGAAATCGACCGATGCTTGCGAGAATG GCAGAGCAAAGGCTACAAAGTCACGGCCTCAGCCTGCGACGTCATGATTCGAGACCAACGACAGAAGCTCGTCGAAATGGTTTCCTCTGCCTTTGACGGG AAACTCAACATTCTCGTGAACAACAGTGGCATCTCAGTCGCTAAAGAAGCAGTAGACTTCACCGCAGAGGACATGGCCATGGTGATGGGCACGAATTTCG AGTCGGCTTATCATCTCTCCCAACTCTCACATCCCTTGCTGAAAGCATCAGGAAATGGGAACATCATCAACATATCTTCTATTGCAAGCTTTCTTTCCCT CCCTCAGACTGCTCTATATGCATCATCTAAAGGAGCAATGAATCAGATGACAAGGAGCTTGGCCGGCGAGTGGGCAAAGGACAACATCAGGGTCAATGCA ATTGCTCCAGGGTTGATCCAGACACCGATGCTGGAGGATGCTGCGAAAGAGTTTATGGATGAGATAATCGGGCGAACTGCAATGAAAAGGGTTGGAGAGG CGAACGAGATATCGTCGTGGGTAGCGTTCCTTAGCTGTCCGGCTGCTTCTTATACGACGGGTCAAGTCATTGTTGTCGATGGAGGCTATACCGTTAATGG CTCTCCTTTCTAG
AA sequence Show only first row Show all	>Lus10024359 pacid=23174980 polypeptide=Lus10024359 locus=Lus10024359.g ID=Lus10024359.BGIv1.0 annot-version=v1.0 MATTGSTDGEFISSRHQRWSLEGMNALVTGGTRGIGHAIVEELAELGVTIHTCARTQTEIDRCLREWQSKGYKVTASACDVMIRDQRQKLVEMVSSAFDG KLNILVNNSGISVAKEAVDFTAEDMAMVMGTNFESAYHLSQLSHPLLKASGNGNIINISSIASFLSLPQTALYASSKGAMNQMTRSLAGEWAKDNIRVNA IAPGLIQTPMLEDAAKEFMDEIIGRTAMKRVGEANEISSWVAFLSCPAASYTTGQVIVVDGGYTVNGSPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29360			NAD(P)-binding Rossmann-fold s...		Lus10024359 [exp]	0	1
AT1G17930			Aminotransferase-like, plant m...		Lus10001981 [exp]	4.5	0.9145
AT1G04670			unknown protein		Lus10002298 [exp]	6.3	0.9145
AT4G34540			NmrA-like negative transcripti...		Lus10012146 [exp]	7.7	0.9145
					Lus10027667 [exp]	8.9	0.9145
					Lus10015682 [exp]	10.0	0.9145
AT4G18340			Glycosyl hydrolase superfamily...		Lus10031034 [exp]	11.0	0.9145
AT5G51030			NAD(P)-binding Rossmann-fold s...		Lus10032524 [exp]	11.8	0.9145
AT2G25940		ALPHAVPE, ALPHA...	alpha-vacuolar processing enzy...		Lus10033344 [exp]	12.6	0.9145
AT2G14378			Protein of unknown function (D...		Lus10019101 [exp]	13.4	0.9145
AT1G29430			SAUR-like auxin-responsive pro...		Lus10020431 [exp]	14.1	0.9145

Compare expression of checked genes

Lus10024359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.