Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06060 270 / 5e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 266 / 1e-89 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29290 266 / 2e-89 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29350 264 / 1e-88 SAG13 senescence-associated gene 13 (.1.2.3) AT2G29360 261 / 1e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29260 263 / 2e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G30670 259 / 5e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 259 / 6e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29370 258 / 3e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29330 253 / 2e-84 TRI tropinone reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010874 [exp] 436 / 2e-156 AT5G06060 295 / 8e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024359 [exp] 406 / 1e-144 AT2G29360 314 / 2e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010873 [exp] 275 / 7e-93 AT5G06060 308 / 2e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040737 [exp] 263 / 2e-88 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3) Lus10040736 [exp] 263 / 3e-88 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004984 [exp] 258 / 4e-86 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 245 / 4e-81 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004985 [exp] 246 / 3e-80 AT2G29340 322 / 5e-110 NAD-dependent epimerase/dehydratase family protein (.1.2.3) Lus10040735 [exp] 241 / 2e-79 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G089800 [exp] 280 / 1e-94 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 271 / 2e-91 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 268 / 2e-90 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 268 / 3e-90 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G059100 [exp] 263 / 3e-88 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 262 / 6e-88 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 259 / 1e-86 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G142600 [exp] 257 / 5e-86 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G244900 [exp] 253 / 3e-83 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 237 / 1e-78 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10024360 pacid=23174930 polypeptide=Lus10024360 locus=Lus10024360.g ID=Lus10024360.BGIv1.0 annot-version=v1.0 ATGGCTACCAGCAGCAGACGTCAATGTTGGTCTCTTGAGGGAATGACGGCTCTTGTCACCGGTGGAACTCGAGGCATCGGGCATGCCATTGTAGAGGAGT TGGCAGAGTTGGGGGTTACAGTCCACACTTGTGCTCGCACCCAGACCGACATCAACCGATGCTTGACAGAATGGCAGAGCAAAGGCTACAAAGTCACGGC CTCAGCCTGCGACGTCATGCTTCGAGACCAACGCCAGAAGCTCGTCGAAAATGTCTCCTTTGCCTTTGACGGGAAGCTCAACATTCTCGTGAACAACAGT GGCATCTCACTCCCGAAACAAGCGGTAGACTTCACCGCAGAGGACATGGCCGCGGTGATGGGCACTAATTTCGACGCGGCTTATCATCTGTCCCAACTCT CACATCCCCTTCTGAAAGCATCAGGGAATGGGAACATCATCAACATATCTTCCATTGGCAGCTTTGTTTCGTTCCCTCTGACTTCTCTGTACTCATCATC TAAAGGAGCAATGAATCAGATGACACGGAGCTTGGCCTGTGAGTGGGCAAAGGACGACATCAGGGTCAACGCAATTGCTGCAGGGTTGATCCAGACATCG ATGCTGCAAGGTGGAAAGGATGCTGGCGGAGAGATGATAGAGACGCTAATCAGGCAAATTCCGATGAAAAGGCCCGGGGAGACGAACGAGATATCGTCGT GGGTGGCATTCCTTAGCAGCTCTGCTGCTTCTTACACGACGGGTCAAGTTATGGTCGTCGATGGAGGCTTTACGGTCAATGCCTCTCCATTCTAG
AA sequence Show only first row Show all	>Lus10024360 pacid=23174930 polypeptide=Lus10024360 locus=Lus10024360.g ID=Lus10024360.BGIv1.0 annot-version=v1.0 MATSSRRQCWSLEGMTALVTGGTRGIGHAIVEELAELGVTVHTCARTQTDINRCLTEWQSKGYKVTASACDVMLRDQRQKLVENVSFAFDGKLNILVNNS GISLPKQAVDFTAEDMAAVMGTNFDAAYHLSQLSHPLLKASGNGNIINISSIGSFVSFPLTSLYSSSKGAMNQMTRSLACEWAKDDIRVNAIAAGLIQTS MLQGGKDAGGEMIETLIRQIPMKRPGETNEISSWVAFLSSSAASYTTGQVMVVDGGFTVNASPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10024360 [exp]	0	1
AT2G48020			Major facilitator superfamily ...		Lus10042676 [exp]	2.2	0.8145
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033336 [exp]	5.0	0.8778
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10010874 [exp]	7.6	0.8530
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10007603 [exp]	11.8	0.6781
					Lus10020135 [exp]	13.6	0.7204
AT4G24000		ATCSLG2	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032416 [exp]	13.9	0.8463
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10002621 [exp]	24.9	0.6896
AT1G80320			2-oxoglutarate (2OG) and Fe(II...		Lus10041279 [exp]	26.8	0.8055
AT1G03700			Uncharacterised protein family...		Lus10015443 [exp]	30.9	0.8167
AT1G50560		CYP705A25	"cytochrome P450, family 705, ...		Lus10015706 [exp]	34.4	0.6755

Compare expression of checked genes

Lus10024360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.