Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02180 432 / 9e-147 Transmembrane amino acid transporter family protein (.1) AT5G02170 431 / 2e-146 Transmembrane amino acid transporter family protein (.1.2) AT2G39130 409 / 2e-137 Transmembrane amino acid transporter family protein (.1) AT3G09340 404 / 9e-136 Transmembrane amino acid transporter family protein (.1) AT3G09330 402 / 4e-135 Transmembrane amino acid transporter family protein (.1) AT3G54830 347 / 2e-113 Transmembrane amino acid transporter family protein (.1) AT2G41190 315 / 6e-101 Transmembrane amino acid transporter family protein (.1) AT5G15240 216 / 1e-64 Transmembrane amino acid transporter family protein (.1.2) AT5G16740 214 / 5e-64 Transmembrane amino acid transporter family protein (.1) AT3G28960 210 / 2e-62 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010855 [exp] 740 / 0 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10039190 [exp] 384 / 2e-127 AT2G39130 652 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10003817 [exp] 280 / 5e-87 AT2G41190 615 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10010457 [exp] 275 / 2e-80 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10037974 [exp] 254 / 2e-78 AT2G39130 551 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10012824 [exp] 250 / 1e-77 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10030469 [exp] 246 / 1e-75 AT5G15240 405 / 4e-139 Transmembrane amino acid transporter family protein (.1.2) Lus10005239 [exp] 239 / 3e-73 AT5G15240 509 / 4e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10030683 [exp] 233 / 1e-70 AT5G15240 510 / 2e-180 Transmembrane amino acid transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G100300 [exp] 522 / 0 AT5G02180 587 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G226000 [exp] 397 / 1e-132 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 389 / 2e-129 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G169000 [exp] 266 / 7e-84 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.008G086500 [exp] 265 / 3e-83 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.017G083500 [exp] 234 / 2e-71 AT5G15240 448 / 4e-156 Transmembrane amino acid transporter family protein (.1.2) Potri.017G083700 [exp] 234 / 3e-71 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.018G099700 [exp] 217 / 3e-65 AT3G28960 348 / 6e-118 Transmembrane amino acid transporter family protein (.1) Potri.002G233200 [exp] 215 / 1e-63 AT5G16740 416 / 5e-143 Transmembrane amino acid transporter family protein (.1) Potri.014G146700 [exp] 204 / 1e-59 AT5G16740 430 / 3e-148 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10024374 pacid=23174936 polypeptide=Lus10024374 locus=Lus10024374.g ID=Lus10024374.BGIv1.0 annot-version=v1.0 ATGAATATTGACGACGATCTGGGGAGGGGGCTTGATCGGGAAGATCATTTCCAGACGGACGATGAGGAAAATCAAGCCGAAAGAACTTGCGACGACAGCT GCAATGATTCGGATTCGGATTATGGTAGCAGTAGCAGCACCAGCAGCTCTTTCTCTTCCCCCAAAGGAATTCCTTGTACCACCGTTAGCATGGAGGAATC CACAACTCCGACGTGGCCTCAGAGTTACAGGGCGTCAATGGACATGCTAACGAATGTGGCGGCTGCTTCTTCGATATCGTTCCTGAAGGAGAATTCTGGA GAAGACGCTGAAGGGTTGTTGCCTTCTTCGGTTTCGGCGAATCCTGAATCGGGTTCTCTCCTAGCAGTGCCTCTTATCCGGAAAAGGAATTTGGGGAAAG ATGTGGTTTGTTCTTCACCATTATCTCCCCATGGCCAAACTTCGGTCTCTCCACATTCACAAATTGTGGCTGATGAAGAGAATAAGCAGAGTTCATATGC ACAAGCAGTCCTTAGAATCAATATATTATGTGGGATAGGGCTGCTTACTACTCCATATGCAGTGAAGGAAGGAGGGTGGCTTAGCCTCTTAATCCTATTC CTATTTGGAGTCATCTGTTGCTACACAGGAACTTTGTTGAAGGAATGTTTAGAAAGCTCTCCCGGTTTGCAAACTTATCCCGATATAGCTCAGGCTGCTT TTGGTATATCGGGTCGATTATTAGTATCTATACTTCTGTACTTTGAATTATACGCAGCTTCCTTAGCCTGTTGTCGTACCTTTCAGGTTTCAAATTTCTC TCTATTCTCGATTTTCGTTGGAAATGGATGTACAAGACGTGTTCTTAGTTTCTCGAGTTATTTGTGTAAAATAGTGGGCGGAGTAGGTGCATCCATCCTA CTCGCCGGTTGCTTGTTGTGGACCGGGATTTTCAATGATGTCGGATTGCATTCAAGTGGGACGGCTCTTGACCTTGGAAACCTACCTTTCGTGATCGGTA TATACGGGTTTTGCTTCTCCGGCCATGCTGTTTTCCCAAACATTTACTACTCCATGAAGGAACCTTCAAGGTTCCCTTCAGTTTTGATCATCAGCTTTGT TTTCTGCTGGTTCATGTACACCGGAGTAGCAATTTGCGGGTTTCTCTTCTTTGGAGAAGCAGTGAAATCACAGTTTACTCTTAGCATGCCTGCAGAATTT GCAGCCTCAAAAATTGCAGTCTGGACTGCAGTTGTGAACCCAATCACGAAATACGCACTGACCATGATGCCAGTAGCGTTGAGCTTAGAAGAACTCATCC CATCTGGGAGGTTTAGATCGTATTCTGTATCACTTGGAATCAGAATAGTTTTAGTACTTTCGACTTTATTCGTGGCTCTGGCAATTCCATTATTTGGTTC TGTGATGGCATTTTGTGGCTCTTTTCTTTCCATGCTTCTCGCTATTATTGTTCCTTGCGCTTGTTATATCAGTGTATTTCATGACAGATTGAGTAGGGTG CAGCTGGCGGCTTGCGTCTTTGCCATACTTGTAGGGGTGATAAGCGCTTCCGTTGGAACATACGCATCAGTGATGAGAATAGTCGATGAAAAGAGCTGA
AA sequence Show only first row Show all	>Lus10024374 pacid=23174936 polypeptide=Lus10024374 locus=Lus10024374.g ID=Lus10024374.BGIv1.0 annot-version=v1.0 MNIDDDLGRGLDREDHFQTDDEENQAERTCDDSCNDSDSDYGSSSSTSSSFSSPKGIPCTTVSMEESTTPTWPQSYRASMDMLTNVAAASSISFLKENSG EDAEGLLPSSVSANPESGSLLAVPLIRKRNLGKDVVCSSPLSPHGQTSVSPHSQIVADEENKQSSYAQAVLRINILCGIGLLTTPYAVKEGGWLSLLILF LFGVICCYTGTLLKECLESSPGLQTYPDIAQAAFGISGRLLVSILLYFELYAASLACCRTFQVSNFSLFSIFVGNGCTRRVLSFSSYLCKIVGGVGASIL LAGCLLWTGIFNDVGLHSSGTALDLGNLPFVIGIYGFCFSGHAVFPNIYYSMKEPSRFPSVLIISFVFCWFMYTGVAICGFLFFGEAVKSQFTLSMPAEF AASKIAVWTAVVNPITKYALTMMPVALSLEELIPSGRFRSYSVSLGIRIVLVLSTLFVALAIPLFGSVMAFCGSFLSMLLAIIVPCACYISVFHDRLSRV QLAACVFAILVGVISASVGTYASVMRIVDEKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02180			Transmembrane amino acid trans...		Lus10024374 [exp]	0	1
AT5G20220			zinc knuckle (CCHC-type) famil...		Lus10036722 [exp]	1.0	0.9507
AT2G33830			Dormancy/auxin associated fami...		Lus10025446 [exp]	2.4	0.8943
AT1G06240			Protein of unknown function DU...		Lus10033620 [exp]	2.8	0.9036
					Lus10042279 [exp]	5.9	0.8878
					Lus10039070 [exp]	6.0	0.8675
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10028489 [exp]	6.2	0.8652
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036099 [exp]	7.5	0.8863
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10024176 [exp]	7.5	0.8749
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026152 [exp]	8.5	0.8927
AT5G38510			Rhomboid-related intramembrane...		Lus10023145 [exp]	8.8	0.8864

Compare expression of checked genes

Lus10024374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.