Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37650 603 / 0 GRAS SCL9 GRAS family transcription factor (.1) AT1G07530 528 / 0 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G29060 492 / 3e-168 GRAS GRAS family transcription factor (.1) AT2G29065 461 / 4e-157 GRAS family transcription factor (.1) AT5G59450 444 / 2e-150 GRAS SCL11 GRAS family transcription factor (.1) AT3G46600 438 / 2e-150 GRAS GRAS family transcription factor (.1.2.3) AT1G07520 435 / 7e-146 GRAS GRAS family transcription factor (.1) AT4G17230 217 / 5e-64 GRAS SCL13 SCARECROW-like 13 (.1) AT5G48150 214 / 5e-63 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 211 / 6e-63 GRAS SCL21 SCARECROW-like 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010845 [exp] 866 / 0 AT2G37650 571 / 0.0 GRAS family transcription factor (.1) Lus10040284 [exp] 578 / 0 AT1G07530 600 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040790 [exp] 576 / 0 AT1G07530 762 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10023404 [exp] 576 / 0 AT1G07530 595 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016521 [exp] 568 / 0 AT1G07530 764 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040787 [exp] 521 / 4e-180 AT1G07530 555 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10001577 [exp] 481 / 2e-163 AT1G07530 573 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10004968 [exp] 478 / 2e-162 AT1G07530 584 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016519 [exp] 453 / 4e-158 AT1G07530 449 / 3e-153 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G086600 [exp] 750 / 0 AT2G37650 723 / 0.0 GRAS family transcription factor (.1) Potri.008G057400 [exp] 620 / 0 AT2G37650 568 / 0.0 GRAS family transcription factor (.1) Potri.009G032700 [exp] 574 / 0 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.010G202300 [exp] 559 / 0 AT1G07530 498 / 2e-167 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032800 [exp] 553 / 0 AT1G07530 666 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241700 [exp] 551 / 0 AT1G07530 759 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G033300 [exp] 549 / 0 AT1G07530 514 / 4e-173 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G242100 [exp] 548 / 0 AT2G29060 563 / 0.0 GRAS family transcription factor (.1) Potri.001G241800 [exp] 543 / 0 AT1G07530 665 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G242000 [exp] 513 / 7e-177 AT2G29060 488 / 9e-165 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10024384 pacid=23174970 polypeptide=Lus10024384 locus=Lus10024384.g ID=Lus10024384.BGIv1.0 annot-version=v1.0 ATGCCAGCTGGAATTTCAAGCAGAGTGAGGATTTCGCAGTTCAACAAAGGCGTTGAAGAAGCTAACAAGTTCCTTCCCAATGGCAACAATCTGTTCCTTA ATATCCAGACCAATGCGAGAATCCGTGCATCCAATGATGTAAAGGTGGAATCTTTACCAAGAGGAAGGAAGAATATTCTGATAAGAGAGGATGTACCAAT TGAAGAAGAGAGGAGTACCAAAGTTTTAGCTGTTCACAAAGATTCTAACTTGCCACCGGATGTATTCGACAGTGTGCTTCTCTGTAGTGTAGGCAAAGGC AAAGAAGACTTGACCGCTCTTCGCGAGTCGTTGAAGAACGCCACGATACGAGACAGCCAGAACGGACAGCACAAGACATTTCGTCAAGGGAGAGGTCGTA TGAAGAAAGGCGCTGCGAAAAAGGACGTAGTGGACTTAAGAACATTGCTCATCACTTGTGCTCAAGCTGTTGCTGCCGACGATGGAACCAGTGCGAGCGA ATTGCTCAAGCAGATTCGTCTCCATTCGTCTCCGTTCGGGGATGCGAATCAGAGACTGGCGAATTGTTTCGCCGATGGATTGGAAGCTCGACTCGCGGGG ACCGGTAGCCAGATCTACAAAGGGCTTGTAGACAAGAAAACTTGTGCTGCTGATGTGTTGAAAGCTTACCATCTGTTTCTAGCTGCTTGCCCTTTCAAAA AGCTTTCTAATTTCGTCTCCAACAAGACTATAAGGACCGTGTCGGGGGATGCAACGAAGGTCCATGTGATAGATTTTGGAGTTCTTTATGGCTTTCAATG GCCAACTCTTATTCAACGCATGTCGTGGAGACCAGGTGGACCTCCTAAGCTTCGTGTTACGGGGATAGATTTCCCGCAGCCTGGATTCAGACCAGCTGAG CGAGTGGAAGCGACCGGGCGGAGGCTGGCAGCCTATGCTGAGAAGTTCAAGGTACCGTTCGAGTACAATGCGATCGCGAAGAGATGGGAGAATGTGCAGC TAGAGGATCTCAAGATCGAAAAGGATGAATTCGTAATTGTGAATTGCTTGTACAGGGCTAAGAACTTGCTGGATGAAACGGTCTGTGTGGACAGTCCAAG GAAGATAGTCCTCGGGTTGATCAAGAGGATCAACCCTCGACTTTTCATCCATGGGGTGATAAACGGGGCGTTCAATGCTCCGTTTTTCGTGACTAGATTC CGGGAGGCATTGTTTCACTTTTCAGCCATGTTCGATATGCTCGAAACCGTGGTGCCCCGAGAAGATCAGGAGCGGATGCTGATAGAGAAAGAAATATTCG GCAGGGAGGCTTTGAATGTTATTGCTTGTGAAGGATGGGAAAGAGTGGAGAGGCCTGAAACTTACAAGCAGTGGCAGGTTCGTTGCCTCAGGGCTGGTTT CGAGCAGCTGCATTGGGATAAGGAGACCATGAAAGAAGCTAATAAGAAAGCTAAAGAACTTTACCATAAAGATTTCTTGATTGACGAGGATAACAAATGG CTGTTGCAAGGATGGAAAGGCCGAATCATTTACGCTCTTTCCATGTGGAAGCCGGCCTCTTAA
AA sequence Show only first row Show all	>Lus10024384 pacid=23174970 polypeptide=Lus10024384 locus=Lus10024384.g ID=Lus10024384.BGIv1.0 annot-version=v1.0 MPAGISSRVRISQFNKGVEEANKFLPNGNNLFLNIQTNARIRASNDVKVESLPRGRKNILIREDVPIEEERSTKVLAVHKDSNLPPDVFDSVLLCSVGKG KEDLTALRESLKNATIRDSQNGQHKTFRQGRGRMKKGAAKKDVVDLRTLLITCAQAVAADDGTSASELLKQIRLHSSPFGDANQRLANCFADGLEARLAG TGSQIYKGLVDKKTCAADVLKAYHLFLAACPFKKLSNFVSNKTIRTVSGDATKVHVIDFGVLYGFQWPTLIQRMSWRPGGPPKLRVTGIDFPQPGFRPAE RVEATGRRLAAYAEKFKVPFEYNAIAKRWENVQLEDLKIEKDEFVIVNCLYRAKNLLDETVCVDSPRKIVLGLIKRINPRLFIHGVINGAFNAPFFVTRF REALFHFSAMFDMLETVVPREDQERMLIEKEIFGREALNVIACEGWERVERPETYKQWQVRCLRAGFEQLHWDKETMKEANKKAKELYHKDFLIDEDNKW LLQGWKGRIIYALSMWKPAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Lus10024384 [exp]	0	1
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10038268 [exp]	1.4	0.8970
AT1G21740			Protein of unknown function (D...		Lus10029683 [exp]	2.0	0.8651
AT5G58630			unknown protein		Lus10018244 [exp]	2.4	0.8534
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10023656 [exp]	3.7	0.8763
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10021302 [exp]	6.7	0.8605
AT5G46070			Guanylate-binding family prote...		Lus10025456 [exp]	11.6	0.8680
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Lus10035614 [exp]	17.2	0.8339
AT2G40070			unknown protein		Lus10002493 [exp]	23.5	0.7199
AT3G48210			unknown protein		Lus10018093 [exp]	24.9	0.8008
AT1G30820			CTP synthase family protein (....		Lus10038403 [exp]	28.0	0.7893

Compare expression of checked genes

Lus10024384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.