Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37630 410 / 4e-143 MYB AtPHAN, AtMYB91, MYB91, AS1 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) AT3G46130 99 / 1e-23 MYB PFG3, ATMYB111 ATMYB48, ATMYB48-3, ATMYB48-1, ATMYB48-2 myb domain protein 48 (.1.2.3.4) AT5G59780 98 / 1e-23 MYB ATMYB59, ATMYB59-1, ATMYB59-3, ATMYB59-2 myb domain protein 59 (.1.2.3) AT5G56110 99 / 3e-23 MYB MS188, ATMYB80, AtMYB103 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) AT1G25340 97 / 5e-23 MYB ATMYB116 myb domain protein 116 (.1.2) AT5G52600 95 / 6e-23 MYB AtMYB82 myb domain protein 82 (.1) AT3G01530 94 / 1e-22 MYB ATMYB57 myb domain protein 57 (.1) AT5G14750 94 / 2e-22 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) AT1G68320 95 / 4e-22 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT2G32460 96 / 1e-21 MYB ATMYB101, AtM1 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025355 [exp] 496 / 1e-177 AT2G37630 422 / 2e-148 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Lus10009037 [exp] 100 / 2e-24 AT1G68320 231 / 1e-75 myb domain protein 62 (.1) Lus10040063 [exp] 103 / 3e-24 AT2G32460 229 / 1e-69 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10009522 [exp] 100 / 8e-24 AT1G08810 284 / 9e-96 myb domain protein 60 (.1.2) Lus10021539 [exp] 100 / 5e-23 AT2G32460 226 / 5e-67 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10005886 [exp] 97 / 6e-23 AT3G46130 265 / 1e-89 myb domain protein 48 (.1.2.3.4) Lus10020343 [exp] 96 / 2e-22 AT1G08810 286 / 1e-96 myb domain protein 60 (.1.2) Lus10027189 [exp] 98 / 3e-22 AT2G32460 243 / 1e-73 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10002056 [exp] 96 / 4e-22 AT5G62470 320 / 6e-109 myb domain protein 96 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G085900 [exp] 452 / 1e-159 AT2G37630 414 / 2e-144 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Potri.017G112300 [exp] 196 / 1e-59 AT2G37630 188 / 2e-56 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Potri.004G102600 [exp] 191 / 2e-57 AT2G37630 243 / 9e-78 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Potri.015G046200 [exp] 102 / 2e-24 AT1G25340 241 / 2e-78 myb domain protein 116 (.1.2) Potri.012G055600 [exp] 101 / 5e-24 AT1G68320 244 / 1e-79 myb domain protein 62 (.1) Potri.011G040400 [exp] 100 / 1e-23 AT2G31180 163 / 6e-49 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.008G122100 [exp] 97 / 7e-23 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.011G167600 [exp] 97 / 1e-22 AT5G56110 338 / 3e-116 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) Potri.009G027300 [exp] 95 / 2e-22 AT3G46130 279 / 3e-95 myb domain protein 48 (.1.2.3.4) Potri.001G235500 [exp] 95 / 2e-22 AT3G46130 276 / 3e-94 myb domain protein 48 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10024392 pacid=23174941 polypeptide=Lus10024392 locus=Lus10024392.g ID=Lus10024392.BGIv1.0 annot-version=v1.0 ATGAAAGAGAGGCAGCGTTGGCGAGCTGAAGAGGACGCCTTACTACGTTCTTACGTCAAACAATATGGACCAAGGGAATGGAACCTCGTTTCCCAGCGCA TGAACACACCCTTAAACCGCGACGCCAAATCCTGCTTGGAACGCTGGAAGAACTACCTCAAACCAGGAATCAAGAAAGGATCCCTCACCGAAGAAGAACA GCACTTAGTCATCAAACTACAAGAGAAATACGGCAACAAGTGGAAGAAAATCGCCTCTGAAGTCCCCGGAAGAACAGCCAAGCGCCTTGGCAAGTGGTGG GAAGTCTTCAAGGAGAAGCAACAAAGAGAGAAGAAGGAAACTAGTAAGACACCTCTCGAGCCTATCGACGAGTCCAAGTACGATCGGATCCTCGAGACAT TCGCCGAGAAGCTAGTCAAGGAAAGAACAACACCACCACCACCTCCTACAGGTTACCCCATGGCAGCTTCTAATGGAAGCAACTATCTTCACACTCCTGA TCATCATCATCATCATCAACATCAACATCAACCTGCAATGCTGCCACCGTGGCTTTCTAGCTCCAGCGGTGGAGTGAGACCTCCTGCTGCTCCATCGGTG ACATTGAGTCTTTCGAGCTCGACTGTTGCTGGTGGTGGTGCTTCTCCATCGATACCATGGCTACAGCCGGCTGACCTTCCACCACCACCACCACTACCAC CACCGGCAGGATTTAGCAATGAGAGTTTGGTGGTGAACGAGCTGGTGGAATGCTGCAGGGAGCTGGATGAAGGGCACCGGGCATGGGCAGCGCATAAGAA GGAAGCTGCTTGGAGGCTGAGGAGGGTTGAGTTGCAGCTGGAGTCGGAGAAGTCGTGTAGGATGAAGGAGAAATCGGAGGAGATAGAGGCGAAGATTAGA GCGATGAGGGAAGAGCAAAAGGCTGCACTCGATGCTATTGAAGCGGAGTATAGAGAGCAGCTGGCTGGGTTGAGGAGGGACGCTGAAGCTAAGGAGCAGA AATTGACTGATCAGTGGGCGGCTAAGCATGGGAGGCTTACTAGCTTTCTTGAGCAGATGGGTTGCAGGACTAGGCTCCCTGACCCAAATGGACGCTAG
AA sequence Show only first row Show all	>Lus10024392 pacid=23174941 polypeptide=Lus10024392 locus=Lus10024392.g ID=Lus10024392.BGIv1.0 annot-version=v1.0 MKERQRWRAEEDALLRSYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQHLVIKLQEKYGNKWKKIASEVPGRTAKRLGKWW EVFKEKQQREKKETSKTPLEPIDESKYDRILETFAEKLVKERTTPPPPPTGYPMAASNGSNYLHTPDHHHHHQHQHQPAMLPPWLSSSSGGVRPPAAPSV TLSLSSSTVAGGGASPSIPWLQPADLPPPPPLPPPAGFSNESLVVNELVECCRELDEGHRAWAAHKKEAAWRLRRVELQLESEKSCRMKEKSEEIEAKIR AMREEQKAALDAIEAEYREQLAGLRRDAEAKEQKLTDQWAAKHGRLTSFLEQMGCRTRLPDPNGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10024392 [exp]	0	1
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10025355 [exp]	1.0	0.8989
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Lus10025165 [exp]	2.0	0.8803
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10037858 [exp]	5.5	0.8705
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10034690 [exp]	6.5	0.8903
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10014717 [exp]	8.4	0.8581
AT1G75060			unknown protein		Lus10028777 [exp]	9.5	0.8685
AT1G53520			Chalcone-flavanone isomerase f...		Lus10026174 [exp]	9.8	0.8639
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Lus10003335 [exp]	10.4	0.8871
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10004573 [exp]	11.0	0.8368
AT4G21970			Protein of unknown function, D...		Lus10020043 [exp]	11.8	0.8287

Compare expression of checked genes

Lus10024392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.