Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02320 398 / 2e-133 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT3G09370 360 / 2e-119 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT5G11510 285 / 4e-87 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT4G32730 277 / 2e-84 MYB ATMYB3R-1, PC-MYB1, ATMYB3R1 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) AT4G00540 218 / 1e-65 MYB MYB3R-2, PC-MYB2, ATMYB3R2 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-2, myb domain protein 3r2 (.1.2) AT2G13960 152 / 7e-44 MYB Homeodomain-like superfamily protein (.1.2) AT4G18770 155 / 6e-42 MYB ATMYB98 myb domain protein 98 (.1) AT5G58850 152 / 1e-40 MYB ATMYB119 myb domain protein 119 (.1) AT3G27785 151 / 1e-40 MYB PGA37, ATMYB118 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) AT5G11050 150 / 3e-40 MYB ATMYB64 myb domain protein 64 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025351 [exp] 877 / 0 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10011687 [exp] 288 / 2e-85 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10022136 [exp] 284 / 3e-85 AT4G32730 682 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10038623 [exp] 264 / 4e-79 AT4G32730 376 / 3e-118 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10008010 [exp] 207 / 3e-61 AT5G02320 237 / 3e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Lus10037898 [exp] 173 / 2e-46 AT4G32730 266 / 4e-77 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10042111 [exp] 152 / 5e-41 AT4G18770 249 / 8e-79 myb domain protein 98 (.1) Lus10002384 [exp] 151 / 2e-40 AT4G18770 250 / 7e-79 myb domain protein 98 (.1) Lus10027695 [exp] 152 / 4e-40 AT4G18770 276 / 1e-87 myb domain protein 98 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G085600 [exp] 507 / 3e-176 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.006G241700 [exp] 286 / 3e-86 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.018G038000 [exp] 281 / 3e-84 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.014G079300 [exp] 236 / 5e-71 AT4G32730 266 / 5e-80 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.003G123800 [exp] 224 / 2e-67 AT3G09370 231 / 3e-70 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Potri.001G347200 [exp] 155 / 7e-42 AT3G27785 223 / 8e-68 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Potri.012G082000 [exp] 153 / 6e-41 AT4G18770 268 / 2e-85 myb domain protein 98 (.1) Potri.005G118500 [exp] 152 / 7e-41 AT4G18770 234 / 2e-72 myb domain protein 98 (.1) Potri.009G044100 [exp] 151 / 5e-40 AT5G58850 224 / 5e-68 myb domain protein 119 (.1) Potri.001G300200 [exp] 144 / 8e-40 AT4G37260 203 / 1e-64 myb domain protein 73 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10024394 pacid=23175047 polypeptide=Lus10024394 locus=Lus10024394.g ID=Lus10024394.BGIv1.0 annot-version=v1.0 ATGGATGAGGCTAAGGTGGAAGAGTGTTGCCGTGAAAATAAGCAACAAACGGCTGCTTCAAGTTCATCTGTCTCCGAGGGTTGTGGGAGTGCCGTTCTCA AGTCTCCTGGAGTTTCAAGTCCAATCACAGCATCGCCAATTCATAGGAGGACCACGGGGCCTATCAGGCGAGCTAAAGGCGGCTGGACCCCTGAAGAGGA TGAGACATTGAGAAAGGCTGTTGCAGCTTATAAGGGGAAGAGTTGGAAGAAAATAGCTGAATATTTTCCTGACAGATCAGAAGTTCAATGTTTGCATCGG TGGCAAAAGGTTCTGAACCCTGATCTTGTGAAAGGACCCTGGACTCCTGAGGAGGATGATAAGATTGTCAAGTTGGTAACAAAATATGGACCAACAAAAT GGTCTGTCATAGCAAAGTCCTTACCAGGCCGCATAGGGAAACAGTGCCGGGAAAGGTGGCACAATCATCTTAATCCTGATATAAAAAAAGATGCATGGAC ACTAGAGGAGGAATTGGCGCTTGTAAATGCCCATCGGATGCATGGGAACAAATGGGCTGAAATAGCTAAGATGTTGCCTGGAAGGACTGACAACTCGATA AAAAATCACTGGAATAGTTCTTTGAAGAAAAAGTTGGACTTTTATATGGTCACTGGGAAACTACCTTCGGTTCAAAGGAATGGAGTCCAAAAAGGATCAG CAGAAGTAAATAGACATGGTCTGACCAGAACTACTAAGGAATCCGATTCTACGGCCCAAACCTCCTCGGATACTACTGTTATTTGCAGGCTGGAAGATGG TAATAGCAAGGATCAGCTGGAATCGTCTGTTCATCTGCCAAGATTGGTTGCTGATTCTGAATGTCGCATACCAACGTGTTTAGATGATAGTAGTTGCGAT AATATTGAGTTAAGACAAAACTTTGAGGCATGTGGACTGAATGGCGAAGTGAATAAAGGATTAAGTATAGGATCTCCACCGGTTGCTGCAACACCCTCAC GTGGTTATCTATGGTACGAGCCACCTTCGGAGCCAGATCGTTGCTTACGGCAAGAGTACGGTTCCAGTCCAGTCTCTTCTTCTCCAGTTGGATTCTTCAC TCCACAATCTGCAAGCAGTAGTAGTAGTTTAAGTGTACAAAGCCCAGAAACAAGATTGAGAATTGCTGCCCAGACCTACCCCAACACGCCGTCCATATTC CGGAAGAGGAAGACTGTAGATAGAGCATCGATTCCTAGTAGTAGTAGTAAACTAGACAAAGAAGAAGGAATATCAATCAGTCAGTCAAACCAGAAACCGA CCTTGCACAGTAGTCCTAGCTTGGTAGATATTGGTAGTAGCAATCTGAAGTCTTTTAATGCATCTCCTCCATATCGACTCAGACCGAAGAGGACACCTGT TCTTAAATCTGTTGAAAGGCAGCTGGAGTTTAGTTTCGAGGAGGATCCACGTCATGATGGTGAAAGTAAAGCTGTTAGATACTCCACAGAAGGAAGTTCC CTTGCTCCTAAGATGGCTGTAACATAG
AA sequence Show only first row Show all	>Lus10024394 pacid=23175047 polypeptide=Lus10024394 locus=Lus10024394.g ID=Lus10024394.BGIv1.0 annot-version=v1.0 MDEAKVEECCRENKQQTAASSSSVSEGCGSAVLKSPGVSSPITASPIHRRTTGPIRRAKGGWTPEEDETLRKAVAAYKGKSWKKIAEYFPDRSEVQCLHR WQKVLNPDLVKGPWTPEEDDKIVKLVTKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALVNAHRMHGNKWAEIAKMLPGRTDNSI KNHWNSSLKKKLDFYMVTGKLPSVQRNGVQKGSAEVNRHGLTRTTKESDSTAQTSSDTTVICRLEDGNSKDQLESSVHLPRLVADSECRIPTCLDDSSCD NIELRQNFEACGLNGEVNKGLSIGSPPVAATPSRGYLWYEPPSEPDRCLRQEYGSSPVSSSPVGFFTPQSASSSSSLSVQSPETRLRIAAQTYPNTPSIF RKRKTVDRASIPSSSSKLDKEEGISISQSNQKPTLHSSPSLVDIGSSNLKSFNASPPYRLRPKRTPVLKSVERQLEFSFEEDPRHDGESKAVRYSTEGSS LAPKMAVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10024394 [exp]	0	1
AT3G45830			unknown protein		Lus10018121 [exp]	1.0	0.9220
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	2.0	0.9084
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Lus10003291 [exp]	2.4	0.8817
AT5G19420			Regulator of chromosome conden...		Lus10009701 [exp]	4.6	0.8660
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10042811 [exp]	7.7	0.8202
AT5G22450			unknown protein		Lus10004878 [exp]	8.4	0.8771
AT5G61400			Pentatricopeptide repeat (PPR)...		Lus10015717 [exp]	8.8	0.8435
AT5G04610			S-adenosyl-L-methionine-depend...		Lus10003963 [exp]	9.5	0.8389
AT2G19430		DWA1, AtTHO6	DWD (DDB1-binding WD40 protein...		Lus10027630 [exp]	10.7	0.8720
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10011536 [exp]	12.3	0.8644

Compare expression of checked genes

Lus10024394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.