Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02540 415 / 3e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 392 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23420 299 / 8e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23430 296 / 1e-99 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G11410 292 / 3e-98 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G24050 237 / 3e-76 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 222 / 2e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G64590 213 / 8e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27760 86 / 1e-18 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53090 82 / 3e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025321 [exp] 504 / 0 AT5G02540 412 / 1e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10023762 [exp] 469 / 1e-167 AT2G37540 429 / 8e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024647 [exp] 330 / 8e-113 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024648 [exp] 325 / 8e-111 AT4G23430 447 / 2e-159 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024649 [exp] 315 / 8e-107 AT4G11410 446 / 5e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032282 [exp] 314 / 1e-106 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035481 [exp] 314 / 1e-106 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031101 [exp] 313 / 2e-106 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10032281 [exp] 308 / 3e-104 AT4G11410 447 / 2e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083900 [exp] 479 / 1e-171 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 317 / 1e-107 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.003G128700 [exp] 310 / 5e-105 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G143800 [exp] 288 / 1e-96 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G103000 [exp] 288 / 2e-96 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G143600 [exp] 286 / 4e-95 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 283 / 2e-94 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G081102 [exp] 228 / 9e-73 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 228 / 9e-73 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G087800 [exp] 226 / 6e-72 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10024415 pacid=23175008 polypeptide=Lus10024415 locus=Lus10024415.g ID=Lus10024415.BGIv1.0 annot-version=v1.0 ATGGTGAGCTTATTCTCCCTGGTCTCGGGACGACCAGGTCCGAGCGGCTTCGGTTCAGCTTCCACTGCTGAGCAAGTCACTCAAGGCATCGACGCTTCCC ATCTCACCGTCATTATCACTGGTGGGGCAAGCGGGATTGGATTCGAGACGGCGAGAGTTCTTGCACTACACAGAGCCCATGTCGTCATCGGTGCCAGGAA CATTGGAGCTGCCGACGAAGCCAAACGCCTAATCCTTAAAGACATCAACAACGGCCGTGTCGATGTCTTGCAGCTCGACTTGTCTTCCATCAAATCCGTC GCATCCTTTGCTGACAGCTTCAAATCCCTCAATCTCCCACTCAACATCCTCATTAATAATGCTGGAGTGATGTTCTGTCCATACAAGACGTCCGAAGATG GGATAGAGATGCAATTCGCAACAAACCATCTTGGACATTTTCTGCTGACAAACCTTCTGCTAGACAAAATGAAAGAGACAGCAAAAGCTACAGGCGTCCA GGGCAGGATCGTAAATCTGTCCTCCATTGCTCACATCCACACTTACAAACGGGGAATTCCCTTTGATCACATCAACGACAAAAAATGGTACTCTGACAAA CGGGCTTACGGCCAATCCAAACTAGCCAACATCCTGCATGCCAAAGAGCTTTCCCGTCGACTCCAGGAAGAAGGAGTGAACATTACCGCAAATGCAGTCC ATCCAGGGCTCATCATGACTCCTCTGTTTAGATACTCTGCCATTTCCATGAGGATTTTGAAATTCTTTTCCAACTTCCTCTGGAAGAACGTCCCTCAGGG TGCTGCGACGACGTGTTACACGGCGCTGCATCCAGCGATGAAAGGAGTGACAGGGAAGTACTTGGCGGACTGCAATGAGGTACAACCAAGCGCCTATGCC ATGGATGAAATGCTGGCCAGGAGTCTCTGGGATTTCAGCATCCAACTCATTAACTCTGCTGATTCTGCTAATAAAGCTTAA
AA sequence Show only first row Show all	>Lus10024415 pacid=23175008 polypeptide=Lus10024415 locus=Lus10024415.g ID=Lus10024415.BGIv1.0 annot-version=v1.0 MVSLFSLVSGRPGPSGFGSASTAEQVTQGIDASHLTVIITGGASGIGFETARVLALHRAHVVIGARNIGAADEAKRLILKDINNGRVDVLQLDLSSIKSV ASFADSFKSLNLPLNILINNAGVMFCPYKTSEDGIEMQFATNHLGHFLLTNLLLDKMKETAKATGVQGRIVNLSSIAHIHTYKRGIPFDHINDKKWYSDK RAYGQSKLANILHAKELSRRLQEEGVNITANAVHPGLIMTPLFRYSAISMRILKFFSNFLWKNVPQGAATTCYTALHPAMKGVTGKYLADCNEVQPSAYA MDEMLARSLWDFSIQLINSADSANKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10024415 [exp]	0	1
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10012742 [exp]	1.0	0.9574
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10005557 [exp]	2.0	0.9523
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10027467 [exp]	3.9	0.9266
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10004918 [exp]	6.5	0.8956
AT1G60010			unknown protein		Lus10010708 [exp]	7.5	0.9234
AT3G61260			Remorin family protein (.1)		Lus10030379 [exp]	7.7	0.9264
AT4G12690			Plant protein of unknown funct...		Lus10036872 [exp]	8.0	0.9356
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10010307 [exp]	8.1	0.8957
AT4G12690			Plant protein of unknown funct...		Lus10006223 [exp]	8.5	0.9384
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10011093 [exp]	8.5	0.9190

Compare expression of checked genes

Lus10024415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.