Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25470 168 / 2e-52 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT4G25480 166 / 1e-51 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) AT1G63030 165 / 1e-51 AP2_ERF DDF2�ADREB1E DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) AT1G12610 165 / 3e-51 AP2_ERF DDF1, DREB1F, FTL1 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) AT5G51990 165 / 6e-51 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT4G25490 160 / 3e-49 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT5G25810 115 / 7e-32 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT5G11590 113 / 9e-31 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT4G32800 110 / 7e-30 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G36450 107 / 5e-29 AP2_ERF HRD HARDY, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006332 [exp] 213 / 8e-70 AT1G12610 194 / 1e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10001871 [exp] 212 / 2e-69 AT1G12610 193 / 4e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10017828 [exp] 208 / 4e-69 AT4G25470 93 / 5e-24 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Lus10006334 [exp] 211 / 5e-69 AT1G12610 193 / 3e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10029601 [exp] 207 / 1e-67 AT1G12610 191 / 3e-61 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10029602 [exp] 182 / 2e-58 AT1G12610 181 / 2e-58 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10017829 [exp] 176 / 4e-56 AT1G63030 181 / 1e-58 DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10027414 [exp] 174 / 8e-55 AT4G25490 208 / 1e-68 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10031654 [exp] 172 / 2e-54 AT4G25490 201 / 9e-66 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G110700 [exp] 198 / 7e-64 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110800 [exp] 190 / 2e-60 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.012G134100 [exp] 189 / 6e-60 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.015G136400 [exp] 173 / 6e-54 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.009G147700 [exp] 133 / 5e-38 AT4G25480 108 / 3e-28 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) Potri.004G187001 [exp] 127 / 2e-35 AT4G25490 124 / 1e-34 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Potri.003G121200 [exp] 118 / 3e-33 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.015G136300 [exp] 117 / 3e-32 AT5G52020 132 / 7e-38 Integrase-type DNA-binding superfamily protein (.1) Potri.016G018600 [exp] 114 / 2e-31 AT2G36450 135 / 7e-40 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.006G021000 [exp] 114 / 2e-31 AT2G36450 122 / 5e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10024491 pacid=23170215 polypeptide=Lus10024491 locus=Lus10024491.g ID=Lus10024491.BGIv1.0 annot-version=v1.0 ATGGAAATGATGTACTCTAGTGGTCAACATTACTCGGAATCATCATCATCTTCTTCTTCTTCAATAACGCAGCTGGCGTCGGAGGTTCCGAAGAGGAAGA CGGGGCGTAAGGTGTTGAAGGAGACACGCCACCCGGTGTTCCGAGGAGTGAGGAGCAGGAGCGGCAACAAGTGGGTGTGCGAACTCCGCCTTCCTAAGAA GGAGACACGTGTCTGGCTTGGGACCTACCCAACTCCTGAAATGGCCGCTCGTGCTCATGACGTGGCGTCCCTCGCCTTCCGCGGGGAATCCGGCTGCCTT AACTTCGCCGACTCTGCCTGGAGGCTTCCCGTCCCTGCTTCCTTGGACCCGAAGGATGTCAGGAAGGCTGCCGCTCAAGCCGCCGAGATGTTTAGACCAC AGAGCTGCTTCCCAGTGGCGGCGGCAGCAGAGGAAGAGGAGGAGGAACGTAATTACTCATGCTTCAGTACTAGTAGTTATTCTAATAATAATAATTATTA TGTGGACGAAGAGGAAGTGCTGGAGATGCCGAGGTTGCTGTCGGAAATGGCGGAGGGGCTTTTGCTGTCTCCACCGTGGACCTATGGATTGGAGACTGGT CATAATCAGTGGGGACATTTTGTGGAGACGACTGATGATGATGCTGATCACTACAATTGGTCACTATGGAATTAG
AA sequence Show only first row Show all	>Lus10024491 pacid=23170215 polypeptide=Lus10024491 locus=Lus10024491.g ID=Lus10024491.BGIv1.0 annot-version=v1.0 MEMMYSSGQHYSESSSSSSSSITQLASEVPKRKTGRKVLKETRHPVFRGVRSRSGNKWVCELRLPKKETRVWLGTYPTPEMAARAHDVASLAFRGESGCL NFADSAWRLPVPASLDPKDVRKAAAQAAEMFRPQSCFPVAAAAEEEEEERNYSCFSTSSYSNNNNYYVDEEEVLEMPRLLSEMAEGLLLSPPWTYGLETG HNQWGHFVETTDDDADHYNWSLWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25480	AP2_ERF	CBF3, DREB1A, A...	C-REPEAT BINDING FACTOR 3, de...		Lus10024491 [exp]	0	1
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10017828 [exp]	1.0	0.9804
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021436 [exp]	2.0	0.9172
AT2G23440			unknown protein		Lus10002969 [exp]	6.0	0.9003
AT5G52250		EFO1, RUP1	REPRESSOR OF UV-B PHOTOMORPHOG...		Lus10005742 [exp]	6.2	0.8828
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10012570 [exp]	6.5	0.8819
AT4G29280		LCR22	low-molecular-weight cysteine-...		Lus10015983 [exp]	8.2	0.8963
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	9.2	0.8963
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	10.1	0.8963
					Lus10009372 [exp]	10.9	0.8963
					Lus10000400 [exp]	11.7	0.8963

Compare expression of checked genes

Lus10024491 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.