Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12630 107 / 7e-29 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G52020 105 / 7e-28 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G36450 98 / 3e-25 AP2_ERF HRD HARDY, Integrase-type DNA-binding superfamily protein (.1) AT4G25490 84 / 2e-19 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT5G51990 82 / 5e-19 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT4G25480 79 / 9e-18 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) AT5G11590 76 / 2e-16 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT2G44940 76 / 3e-16 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G25470 74 / 8e-16 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT4G32800 74 / 1e-15 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017830 [exp] 277 / 4e-95 AT5G52020 137 / 7e-40 Integrase-type DNA-binding superfamily protein (.1) Lus10031652 [exp] 113 / 3e-31 AT5G52020 150 / 5e-46 Integrase-type DNA-binding superfamily protein (.1) Lus10031655 [exp] 103 / 1e-27 AT5G52020 143 / 7e-43 Integrase-type DNA-binding superfamily protein (.1) Lus10027413 [exp] 103 / 2e-27 AT1G12630 146 / 3e-44 Integrase-type DNA-binding superfamily protein (.1) Lus10014376 [exp] 103 / 4e-27 AT2G36450 167 / 2e-52 HARDY, Integrase-type DNA-binding superfamily protein (.1) Lus10031656 [exp] 96 / 2e-24 AT5G52020 148 / 5e-45 Integrase-type DNA-binding superfamily protein (.1) Lus10031654 [exp] 84 / 5e-20 AT4G25490 201 / 9e-66 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10027412 [exp] 83 / 4e-19 AT5G51990 239 / 3e-80 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10035566 [exp] 79 / 7e-18 AT4G25470 143 / 7e-43 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G110500 [exp] 134 / 1e-39 AT5G52020 152 / 1e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.003G121200 [exp] 130 / 5e-38 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.006G021000 [exp] 105 / 6e-28 AT2G36450 122 / 5e-35 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.016G018600 [exp] 104 / 1e-27 AT2G36450 135 / 7e-40 HARDY, Integrase-type DNA-binding superfamily protein (.1) Potri.015G136300 [exp] 103 / 5e-27 AT5G52020 132 / 7e-38 Integrase-type DNA-binding superfamily protein (.1) Potri.012G134000 [exp] 100 / 3e-25 AT5G52020 123 / 5e-34 Integrase-type DNA-binding superfamily protein (.1) Potri.001G110800 [exp] 90 / 2e-21 AT4G25470 164 / 4e-50 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) Potri.012G134100 [exp] 89 / 5e-21 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.001G110700 [exp] 81 / 1e-18 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.015G136400 [exp] 80 / 5e-18 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10024492 pacid=23170248 polypeptide=Lus10024492 locus=Lus10024492.g ID=Lus10024492.BGIv1.0 annot-version=v1.0 ATGGCCGACCCATATAATAACTATTATAATAATTCCTACCCAGCACCCCATCCTAATAATAATAACGCTCCCACTAATTCCACTTCTCCTCCTCCTTCTT CCTCAAAGCACCCCAACTACCGCGGAATCCGCTACCGTGGCGGTAAATGGGTCTCTGAAATCCGGGAGCCCCGCAAAACCAACCGTATTTGGCTCGGTAC TTTTCCCGCGGCTGAGATTGCCGCCGCGGCATACGACGTAGCTGCTCTGGCTCTCAAGGGCGATGAAGCCGTCCTTAACTTCCCCGAAGCGGCCCATTCC TACCCTATCCCTGCCTCCTCCTCTGCCGCTGATATCCGCAATGCTGCTGCAGCTGCGGCCGCTATCAAGAAGGACGAGATCATGCGGGCTACTTGGTCTT CGTCCACGTCCATTAATGATCATAATCATGAGCAGGGGTTAACTAGTAATTTTAATGAGTTTGGATCAGGCGCCACCGCGAATTACAATTACTCAGGAGG TGATCAGTTTGTCGACGAGGAGGCGTTGTTTGATATGCCGAATTTGCTGGTGAATATGGCTCAAGGGATGATGGTTTCTCCGCCGCGATTTCCGACGTAC GATGATGGCTGTTACTATTCCCAGGAGGATGATCACACTTGCAATGGGGACAGTCTTTGGACGAGCGGCTACTATTGA
AA sequence Show only first row Show all	>Lus10024492 pacid=23170248 polypeptide=Lus10024492 locus=Lus10024492.g ID=Lus10024492.BGIv1.0 annot-version=v1.0 MADPYNNYYNNSYPAPHPNNNNAPTNSTSPPPSSSKHPNYRGIRYRGGKWVSEIREPRKTNRIWLGTFPAAEIAAAAYDVAALALKGDEAVLNFPEAAHS YPIPASSSAADIRNAAAAAAAIKKDEIMRATWSSSTSINDHNHEQGLTSNFNEFGSGATANYNYSGGDQFVDEEALFDMPNLLVNMAQGMMVSPPRFPTY DDGCYYSQEDDHTCNGDSLWTSGYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10024492 [exp]	0	1
AT1G53590		NTMCTYPE6.1 ,NT...	Calcium-dependent lipid-bindin...		Lus10013710 [exp]	8.6	0.7028
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10040656 [exp]	9.2	0.6997
AT2G20570	GARP	ATGLK1, GLK1, G...	ARABIDOPSIS GOLDEN2-LIKE 1, GB...		Lus10039883 [exp]	10.2	0.7121
AT3G51760			Protein of unknown function (D...		Lus10022661 [exp]	14.7	0.6959
AT3G44240			Polynucleotidyl transferase, r...		Lus10038113 [exp]	19.7	0.6586
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10022612 [exp]	28.9	0.6970
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10012610 [exp]	29.9	0.6964
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10017828 [exp]	34.2	0.6774
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Lus10017830 [exp]	36.3	0.6427
AT2G31230	AP2_ERF	ATERF15	ethylene-responsive element bi...		Lus10022935 [exp]	37.5	0.6207

Compare expression of checked genes

Lus10024492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.