Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63160 615 / 0 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) AT1G21690 213 / 6e-67 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G77470 210 / 3e-65 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) AT5G27740 116 / 1e-29 RFC3, EMB251, EMB161, EMB2775 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) AT5G22010 66 / 9e-12 ATRFC1 replication factor C 1, replication factor C1 (.1) AT1G14460 64 / 6e-11 AAA-type ATPase family protein (.1) AT1G24290 61 / 6e-10 AAA-type ATPase family protein (.1) AT2G02480 56 / 3e-08 STI STICHEL, AAA-type ATPase family protein (.1) AT5G45720 50 / 1e-06 AAA-type ATPase family protein (.1.2) AT1G04730 47 / 2e-05 CTF18 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008003 [exp] 676 / 0 AT1G63160 605 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Lus10025689 [exp] 221 / 1e-69 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10018144 [exp] 219 / 7e-69 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10028543 [exp] 201 / 4e-62 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10019391 [exp] 105 / 9e-26 AT5G27740 643 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10043248 [exp] 87 / 7e-19 AT5G27740 561 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10013372 [exp] 79 / 7e-16 AT5G22010 1128 / 0.0 replication factor C 1, replication factor C1 (.1) Lus10041764 [exp] 73 / 7e-14 AT5G27740 269 / 3e-84 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10028316 [exp] 71 / 2e-13 AT5G27740 271 / 6e-86 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G123200 [exp] 630 / 0 AT1G63160 587 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Potri.002G081200 [exp] 214 / 1e-66 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.005G181300 [exp] 202 / 1e-62 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.002G080100 [exp] 166 / 4e-48 AT1G21690 505 / 1e-180 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.019G040000 [exp] 103 / 8e-25 AT5G27740 621 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.001G213900 [exp] 69 / 9e-13 AT5G22010 1117 / 0.0 replication factor C 1, replication factor C1 (.1) Potri.003G044900 [exp] 66 / 9e-12 AT2G02480 1147 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.003G093400 [exp] 62 / 2e-10 AT5G27740 182 / 2e-53 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.004G230300 [exp] 60 / 1e-09 AT2G02480 1189 / 0.0 STICHEL, AAA-type ATPase family protein (.1) Potri.011G023800 [exp] 59 / 2e-09 AT1G24290 689 / 0.0 AAA-type ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0604 [flax] [poplar] post-AAA PF08542 [flax] [poplar] Rep_fac_C Replication factor C C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10024504 pacid=23170254 polypeptide=Lus10024504 locus=Lus10024504.g ID=Lus10024504.BGIv1.0 annot-version=v1.0 ATGGCGTCGTCTTCAGTCTCCGCGGGCAGTACCTACGACATGCCATGGGTGGAGAAGTACCGGCCGACCAAAGTGGTCGACATAGTCGGCAATGAGGACG CCATCTCTCGCCTCCAAGTCATCGCCATCGACGGAAACATGCCTAATTTGATTTTATCTGGACCGCCTGGAACTGGGAAAACGACGAGTATACTCGCTCT TGCGCATGAGCTTCTTGGGCCGAGCTACAAGGATGCAGTTTTGGAGCTGAATGCATCTGATGACAGGGGAATAGATGTCGTGAGGAACAAAATCAAAATG TTTGCACAAATGAAGCTAACACTTCCTCCCGGGAGGCACAAAATCGTGATTCTCGATGAAGCTGATAGCATGACATCAGGAGCGCAACAAGCCTTGAGGC GGACTATGGAAATATACTCGAGTACCACCCGCTTTGCTCTTGCTTGCAATACTTCATCTAAAGTTATTGAGCCTATTCAAAGTAGATGCGCCGTTGTCCG ATTCTCAAGACTGTCTGATCAGGAGATCCTTGGTCGTTTGATGGTGGTGGTGGATGCAGAAAAGGTTCCATACGTCCCTGAAGGTCTTGAAGCCATCATT TTCACAGCTGATGGGGATATGAGACAGGCATTGAATAACTTGCAAGCTACATTCAGTGGATTCCGGTTTGTCAACCAGGAAAATGTTTTTAAGGTATGCG ACCAGCCTCATCCTCTGCACGTGAAAAATATGGTGCGTCAAGTTATAGAGGGAAAGTTCGATGATGCATGCTCTGGTTTGAAGCAGCTGTACGACCTTGG GTATTCCCCGACTGATATTATCACAACTCTGTTCCGGATCATAAAAAATTATGACATGGCAGAGTATCTTAAACTAGAATTCATGAAGGAAACTGGGTTT GCGCACATGAGAATCTGTGATGGAGTTGGCTCCTACCTTCAAATGTGCGGCCTCTTAGCTAAACTTGCCCTGGCTCGTGACACTGCCAAAGCAGTATGA
AA sequence Show only first row Show all	>Lus10024504 pacid=23170254 polypeptide=Lus10024504 locus=Lus10024504.g ID=Lus10024504.BGIv1.0 annot-version=v1.0 MASSSVSAGSTYDMPWVEKYRPTKVVDIVGNEDAISRLQVIAIDGNMPNLILSGPPGTGKTTSILALAHELLGPSYKDAVLELNASDDRGIDVVRNKIKM FAQMKLTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSSTTRFALACNTSSKVIEPIQSRCAVVRFSRLSDQEILGRLMVVVDAEKVPYVPEGLEAII FTADGDMRQALNNLQATFSGFRFVNQENVFKVCDQPHPLHVKNMVRQVIEGKFDDACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF AHMRICDGVGSYLQMCGLLAKLALARDTAKAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Lus10024504 [exp]	0	1
AT3G22520			unknown protein		Lus10041202 [exp]	3.5	0.9201
AT3G53440			Homeodomain-like superfamily p...		Lus10039632 [exp]	5.9	0.9145
AT2G25970			KH domain-containing protein (...		Lus10020998 [exp]	6.0	0.8902
AT5G03970			F-box associated ubiquitinatio...		Lus10042547 [exp]	6.5	0.9078
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10011936 [exp]	7.1	0.9243
AT1G02870			unknown protein		Lus10002436 [exp]	10.7	0.8733
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10007860 [exp]	12.0	0.8750
AT3G01710			TPX2 (targeting protein for Xk...		Lus10032115 [exp]	12.8	0.9194
AT5G58930			Protein of unknown function (D...		Lus10040700 [exp]	14.5	0.8901
AT3G62300		ATDUF7	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10002437 [exp]	16.1	0.8997

Compare expression of checked genes

Lus10024504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.