Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12420 875 / 0 SKU5 Cupredoxin superfamily protein (.1.2) AT4G25240 732 / 0 SKS1 SKU5 similar 1 (.1) AT5G51480 730 / 0 SKS2 SKU5 similar 2 (.1) AT5G48450 657 / 0 SKS3 SKU5 similar 3 (.1) AT4G22010 491 / 2e-169 SKS4 SKU5 similar 4 (.1) AT1G76160 484 / 7e-167 SKS5 SKU5 similar 5 (.1) AT1G21850 481 / 2e-165 SKS8 SKU5 similar 8 (.1) AT1G41830 480 / 6e-165 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT1G55570 476 / 2e-163 SKS12 SKU5 similar 12 (.1) AT4G38420 475 / 4e-163 SKS9 SKU5 similar 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032241 [exp] 1040 / 0 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10028921 [exp] 959 / 0 AT4G12420 975 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10004339 [exp] 959 / 0 AT4G12420 979 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10031143 [exp] 753 / 0 AT4G25240 898 / 0.0 SKU5 similar 1 (.1) Lus10031722 [exp] 749 / 0 AT4G25240 897 / 0.0 SKU5 similar 1 (.1) Lus10038920 [exp] 723 / 0 AT5G51480 851 / 0.0 SKU5 similar 2 (.1) Lus10027207 [exp] 719 / 0 AT5G51480 840 / 0.0 SKU5 similar 2 (.1) Lus10025860 [exp] 718 / 0 AT5G48450 882 / 0.0 SKU5 similar 3 (.1) Lus10038239 [exp] 712 / 0 AT5G48450 858 / 0.0 SKU5 similar 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G112700 [exp] 937 / 0 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.001G120300 [exp] 936 / 0 AT4G12420 930 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.015G127200 [exp] 763 / 0 AT4G25240 882 / 0.0 SKU5 similar 1 (.1) Potri.012G126400 [exp] 760 / 0 AT4G25240 883 / 0.0 SKU5 similar 1 (.1) Potri.014G177700 [exp] 722 / 0 AT5G48450 885 / 0.0 SKU5 similar 3 (.1) Potri.005G247700 [exp] 510 / 6e-177 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.004G180500 [exp] 506 / 2e-175 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.002G227600 [exp] 505 / 1e-174 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 505 / 1e-174 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 493 / 4e-170 AT4G22010 780 / 0.0 SKU5 similar 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10024604 pacid=23161579 polypeptide=Lus10024604 locus=Lus10024604.g ID=Lus10024604.BGIv1.0 annot-version=v1.0 ATGGCGGAATGTAGGCTGCTTCTGGCTGTGTTTGTGGTGCTAAAGCTTGTGAGCTTAAGCTCTGCTGGAGATCCGTATGCTTTCTTCAACTTTGAGGTCT CTTACATTACTGCTTCCCCTCTTGGAGAGCCTCAACAGGTTATTGCCATCAATGGCAAGTTCCCTGGCCCAACTGTGAATGTGACGACCAATGACAACGT TGTTGTCAATGTTAGGAACAAACTGGACGAGAATCTGCTTTTGCATTGGTCTGGGATTCAGCAAAGGAGGAGCTCATGGGAAGATGGAGTTCCAGGAACA AACTGCCCAATTCCTCCAAAGTGGAACTGGACTTATCAGTTTCAAGTGAAGGACCAAATTGGGAGTTTCTTCTACTTCCCTTCTCTCAACATGCAGAGAT CCTCCGGTGGGTTCGGGGGCTTCATTATCAACAACCGCGGAGAAATTCCTATCCCCTTCGGTCAGCCTGAGGGAGACATTGTCATCTTGATTGGTGATTG GTACAAGAGGAACCATACGGCTTTGAGGAGTGCCCTTGATGCAGGGAGAGATCTTGGAATGCCTGATGGAGTTCTCATCAATGGCAAAGGGCCTTTCCAG TACAACACCACGTTTGTTCCGGATGGCATTGACTATGAAACCATAACTGTTCAGCCAGGAAAAACTTACCGAGTGAGAGTTCACAACGTTGGAGTGTCGA CTAGCTTGAATTTCAGGATCCAGAATCACAATTTGCTCTTAGCAGAGTCTGAAGGGTCATACACAGTGCAGCAGAACTATACTAGCTTAGATATACACGT AGGACAGTCATATTCTTTCCTCGTAACCATGGATCAGAACGCTAGCAGCGATTACTACATCGTAGCTAGTGCTAGAATGGTGAACGAAACGACGTGGAAA AGAGTGACTGGTGTCGCAGTCTTGCACTATACCAACTCCAAGGGGAAGGCACACGGTCCCTTACCGGCAGCACCTCAAGATGAATTCGACAAGACTTTCT CGATGAACCAAGCACGGTCTATCAGATGGAATGTTTCAGCAAGTGGAGCACGTCCCAACCCACAGGGATCGTTCAAATATGGATCGATCAACGTAACTGA TGTGTACGTCCTGAAGAACAAGCCGGCTGTGACAATCAACGGGAAGAAACGAGCAACTCTTAGTGGGATATCGTATGTCAATCCTCGTACCCCAATCAGG CTTGCTGATCACTTCAAAGTGAAGAATGTCTATAAGCTTGACTTCCCCAACAGACCATTGACCGGACCTCCGAAAATGGAGACATCAGTCATTAATGGGA CCTTCAGGGGATTCATGGAGATCATTCTTCAAAACAATGACACCAGGATGATGAGCTATCACCTTAATGGATATGCAGTTTTCGTTGTCGGGATGGACTA CGGAGAATGGTCTGAGACCAGCAGGGGCACGTACAACAAGTGGGATGGCATTGCTCGCTCGACCGTCCAAGTCTACCCAGGAGCATGGACAGCGGTCCTG GTATCACTAGACAACGTCGGAGTATGGAACCTCAGAACAGAAAACCTCGACTCGTGGTACCTAGGACAGCAAACCTACGTGAGAGTCGTGAATCCCGAGG CAACAAACAAGACTGAGCTGCCTATCCCGGACAACGCCCTCTTCTGTGGTGCCTTGAGCAGAATGCAGAAGTAA
AA sequence Show only first row Show all	>Lus10024604 pacid=23161579 polypeptide=Lus10024604 locus=Lus10024604.g ID=Lus10024604.BGIv1.0 annot-version=v1.0 MAECRLLLAVFVVLKLVSLSSAGDPYAFFNFEVSYITASPLGEPQQVIAINGKFPGPTVNVTTNDNVVVNVRNKLDENLLLHWSGIQQRRSSWEDGVPGT NCPIPPKWNWTYQFQVKDQIGSFFYFPSLNMQRSSGGFGGFIINNRGEIPIPFGQPEGDIVILIGDWYKRNHTALRSALDAGRDLGMPDGVLINGKGPFQ YNTTFVPDGIDYETITVQPGKTYRVRVHNVGVSTSLNFRIQNHNLLLAESEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASSDYYIVASARMVNETTWK RVTGVAVLHYTNSKGKAHGPLPAAPQDEFDKTFSMNQARSIRWNVSASGARPNPQGSFKYGSINVTDVYVLKNKPAVTINGKKRATLSGISYVNPRTPIR LADHFKVKNVYKLDFPNRPLTGPPKMETSVINGTFRGFMEIILQNNDTRMMSYHLNGYAVFVVGMDYGEWSETSRGTYNKWDGIARSTVQVYPGAWTAVL VSLDNVGVWNLRTENLDSWYLGQQTYVRVVNPEATNKTELPIPDNALFCGALSRMQK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	0	1
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10032241 [exp]	1.0	0.9548
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10020120 [exp]	1.4	0.9253
AT5G19770		TUA3	tubulin alpha-3 (.1)		Lus10013765 [exp]	2.4	0.9092
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10038278 [exp]	3.2	0.8853
AT1G62981			Protein of unknown function (D...		Lus10024481 [exp]	3.5	0.9013
AT5G25510			Protein phosphatase 2A regulat...		Lus10017752 [exp]	3.5	0.8753
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10024204 [exp]	3.7	0.8903
AT5G19780		TUA5	tubulin alpha-5 (.1)		Lus10039169 [exp]	3.9	0.8989
AT3G25700			Eukaryotic aspartyl protease f...		Lus10041494 [exp]	4.7	0.8755
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10042499 [exp]	5.2	0.8856

Compare expression of checked genes

Lus10024604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.