Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11410 459 / 6e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 459 / 9e-164 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23420 449 / 3e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G02540 371 / 5e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 370 / 5e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 269 / 5e-89 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G24050 269 / 8e-89 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64590 233 / 8e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G54190 118 / 3e-30 PORA protochlorophyllide oxidoreductase A (.1.2) AT1G03630 112 / 3e-28 PORC ,POR C protochlorophyllide oxidoreductase C (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032282 [exp] 572 / 0 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10032281 [exp] 555 / 0 AT4G11410 447 / 2e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024649 [exp] 555 / 0 AT4G11410 446 / 5e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024648 [exp] 553 / 0 AT4G23430 447 / 2e-159 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035481 [exp] 546 / 0 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031101 [exp] 545 / 0 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024685 [exp] 514 / 0 AT4G23430 431 / 4e-152 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035480 [exp] 467 / 4e-167 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035479 [exp] 467 / 2e-166 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128700 [exp] 486 / 1e-174 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 456 / 9e-163 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G103000 [exp] 441 / 4e-157 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G146600 [exp] 438 / 1e-155 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143600 [exp] 438 / 3e-155 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143800 [exp] 412 / 2e-145 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G083900 [exp] 392 / 1e-137 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.T124508 [exp] 268 / 9e-89 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.015G081102 [exp] 268 / 9e-89 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G087800 [exp] 259 / 4e-85 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10024647 pacid=23161516 polypeptide=Lus10024647 locus=Lus10024647.g ID=Lus10024647.BGIv1.0 annot-version=v1.0 ATGTGGATATTTGGATGGAAAGGAGCATCTGGGTTCTCAGGTTGCTCCACTGCTGAGCAAGTTACAGATGGAATCGACGCTACTGGTCTCACTGCAATCG TCACAGGAGCATCGAGTGGAATTGGTAAGGAGACATCAAGGGTCCTCGCCCTTAGAGGTACTCATGTGGTTATGGCTGTGAGAAATGTTGATGCTGGTAA GAGTGTTAAAGAAGGGATCCTTAAGGAAATCCCAAATGCTAAAGTTGATATCATGAAGCTGGATCTCAGCTCCATGGCATCAGTCAAGAAATTCGCCTCC CAATATGTCTCTTCAGGCCTTCCCCTCAATCTTCTCATTAACAATGCAGGCATTATGATGTGTCCTTACATGCTCTCCACTGACAGCGTAGAGATGCAAT TTGCTACTAACCATATTGGACATTTTCTATTGACACATCTTTTGCTGGACACAATGAAGACAACTGCTCGTGACAGTAATCTCGAAGGAAGAATCGTTAA CTTGGCATCAGAAGCACACCGTATTCCATACAAGGAAGGAGTTCGTTTCGACAAGATCAACAATGAAGCAGAGTATAGCACCATGCGTGCTTATGGACAG TCAAAGCTCGCTAACATTCTTCATGCTAATGAGCTCACAAGGCGCTTCAAGGAAGAGGGAGTCAACATAACTGCCAATTCCCTTCACCCTGGTGTCATAG CAACAAACCTTCTTCGCCACTCAGGCGTTTTTGAAACCATTACAAATACATTTGGCAAATTCGTGATGAAAAATTTTCAGCAGGGTGCAGCAACTACGTG CTATGTGGCATTGCATCCACAAGTGAAGGGAGTAAGTGGAGAATACTTCAGTGACAGTAACGTATCCAAAGCAACCGCTCTGGCTATGGATGAAGAGTTG GGGAGAAAGCTGTGGGATTTCAGTTTGGACTTGGTCAACCCCTTTTGCTGA
AA sequence Show only first row Show all	>Lus10024647 pacid=23161516 polypeptide=Lus10024647 locus=Lus10024647.g ID=Lus10024647.BGIv1.0 annot-version=v1.0 MWIFGWKGASGFSGCSTAEQVTDGIDATGLTAIVTGASSGIGKETSRVLALRGTHVVMAVRNVDAGKSVKEGILKEIPNAKVDIMKLDLSSMASVKKFAS QYVSSGLPLNLLINNAGIMMCPYMLSTDSVEMQFATNHIGHFLLTHLLLDTMKTTARDSNLEGRIVNLASEAHRIPYKEGVRFDKINNEAEYSTMRAYGQ SKLANILHANELTRRFKEEGVNITANSLHPGVIATNLLRHSGVFETITNTFGKFVMKNFQQGAATTCYVALHPQVKGVSGEYFSDSNVSKATALAMDEEL GRKLWDFSLDLVNPFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10024647 [exp]	0	1
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10011930 [exp]	7.5	0.8709
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10008633 [exp]	7.7	0.8670
AT5G17000			Zinc-binding dehydrogenase fam...		Lus10004379 [exp]	11.0	0.8952
AT5G46080			Protein kinase superfamily pro...		Lus10025455 [exp]	11.8	0.8652
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10013500 [exp]	13.7	0.8761
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016467 [exp]	16.7	0.8785
					Lus10021100 [exp]	17.9	0.8651
AT4G22750			DHHC-type zinc finger family p...		Lus10015872 [exp]	21.1	0.8599
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001274 [exp]	32.7	0.8555
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10017489 [exp]	33.9	0.8633

Compare expression of checked genes

Lus10024647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.