Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11410 446 / 6e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 435 / 2e-154 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23420 433 / 1e-153 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT5G02540 363 / 6e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 360 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 273 / 2e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G24050 265 / 3e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64590 230 / 1e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27760 106 / 4e-26 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53090 101 / 3e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032281 [exp] 636 / 0 AT4G11410 447 / 2e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024647 [exp] 555 / 0 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032282 [exp] 553 / 0 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024648 [exp] 541 / 0 AT4G23430 447 / 2e-159 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035481 [exp] 508 / 0 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031101 [exp] 506 / 0 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024685 [exp] 495 / 1e-177 AT4G23430 431 / 4e-152 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035480 [exp] 451 / 8e-161 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035479 [exp] 451 / 2e-160 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128700 [exp] 473 / 2e-169 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 436 / 4e-155 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G103000 [exp] 418 / 9e-148 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G146600 [exp] 412 / 1e-145 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143600 [exp] 409 / 2e-143 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143800 [exp] 392 / 9e-138 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G083900 [exp] 382 / 1e-133 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.T124508 [exp] 267 / 3e-88 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.015G081102 [exp] 267 / 3e-88 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G087800 [exp] 262 / 4e-86 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10024649 pacid=23161528 polypeptide=Lus10024649 locus=Lus10024649.g ID=Lus10024649.BGIv1.0 annot-version=v1.0 ATGTGGATTTGTGGATGGAAAGGAGCATCTGGGTTCTCAGGTTGCTCCACTGCCGAGCAAGTTACTAATGGAATCGATGCTGCTGGTCTCACTGCAATCG TCACAGGAGGATCGAGTGGACTTGGTAAGGAGACATCAAGGGTGCTTGCTCTAAGAGGTGCTCATGTGATTATAGCTGTGAGAAATGTTGATGCTGGTAA GAGTGTTAAAGAAGAGATCCTCAAGGAAATCCCAAATGCTAAAGTTGACATCATGAAGCTGGATCTCAACTCAATGGCATCAGTCAAGAAATTCGCTTCC GAATACGTCTCCTCAGGCCTCCCTCTCAATCTCCTCATTAACAATGCAGGCGTTATGTGCCCTTACATGCTCTCCGAAGATAACATAGAGATGCACTTTG CTACTAACCATGTTGGACATTTTCTCTTGACACATCTTTTGCTGGACACAATGAAGACGACTGCTCGTGACAGTAATCTCGAAGGAAGAATCGTTAACTT GTCATCAGACTTCCACCGTTTCGCATATAAAGAAGGAGTTCGTTTCGACAAGATCAACGATGAAACAGAGTACACTCTCATGGGTGCTTATGGCCAATCA AAGCTCGCTAACATTCTTCATGCTAATGAGCTCGCAAGGCGCTTCAAGGAAGAGGGAGTGAACATTACTGCCAATTCGCTTCACCCTGGACTCATACCAA CAAACGTTCTTCGCCACAGAGGAGTTATGAATGCCATTACGAATACCATTGGCAGATTCATGATGAAAAATATTCCGCAGGGAGCAGCAACTACATGCTA TGTGGCATTGCATCCACAAGCGAAGGGAGTAAGTGGAGAATACTTCAGTGATAGTAATGTATCCAAAAATGTAACCACTCTGGCTAAGGATGAAGTGTTG GGGAAAAAGCTGTGGAATTTCAGCATGGACTTGATCAATCCTTTTTGCTGA
AA sequence Show only first row Show all	>Lus10024649 pacid=23161528 polypeptide=Lus10024649 locus=Lus10024649.g ID=Lus10024649.BGIv1.0 annot-version=v1.0 MWICGWKGASGFSGCSTAEQVTNGIDAAGLTAIVTGGSSGLGKETSRVLALRGAHVIIAVRNVDAGKSVKEEILKEIPNAKVDIMKLDLNSMASVKKFAS EYVSSGLPLNLLINNAGVMCPYMLSEDNIEMHFATNHVGHFLLTHLLLDTMKTTARDSNLEGRIVNLSSDFHRFAYKEGVRFDKINDETEYTLMGAYGQS KLANILHANELARRFKEEGVNITANSLHPGLIPTNVLRHRGVMNAITNTIGRFMMKNIPQGAATTCYVALHPQAKGVSGEYFSDSNVSKNVTTLAKDEVL GKKLWNFSMDLINPFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10024649 [exp]	0	1
AT1G65295			unknown protein		Lus10020197 [exp]	2.0	0.8376
AT5G07980			dentin sialophosphoprotein-rel...		Lus10034692 [exp]	4.0	0.8427
AT1G35180			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10010635 [exp]	6.3	0.8238
AT5G45030			Trypsin family protein (.1.2)		Lus10018312 [exp]	6.9	0.7321
AT5G62575		SDH7B, SDH7	succinate dehydrogenase 7B, su...		Lus10042141 [exp]	7.3	0.7266
AT2G32580			Protein of unknown function (D...		Lus10035349 [exp]	9.5	0.8208
AT5G49800			Polyketide cyclase/dehydrase a...		Lus10026274 [exp]	11.3	0.7704
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10019433 [exp]	12.2	0.7713
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10043289 [exp]	13.4	0.7892
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10004684 [exp]	14.7	0.8346

Compare expression of checked genes

Lus10024649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.