Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63910 259 / 6e-82 MYB AtMYB103 myb domain protein 103 (.1) AT3G13890 211 / 1e-63 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT4G01680 201 / 3e-61 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT5G26660 203 / 2e-60 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT1G09540 201 / 1e-59 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT4G25740 192 / 8e-59 RNA binding Plectin/S10 domain-containing protein (.1.2) AT1G57560 196 / 1e-58 MYB ATMYB50 myb domain protein 50 (.1) AT3G12720 194 / 1e-57 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT5G41520 188 / 4e-57 RNA binding Plectin/S10 domain-containing protein (.1.2) AT5G52650 186 / 2e-56 RNA binding Plectin/S10 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032298 [exp] 801 / 0 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10038846 [exp] 226 / 2e-68 AT5G52660 292 / 2e-96 Homeodomain-like superfamily protein (.1.2) Lus10039282 [exp] 209 / 3e-65 AT4G25740 236 / 1e-80 RNA binding Plectin/S10 domain-containing protein (.1.2) Lus10015608 [exp] 210 / 5e-63 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10038022 [exp] 199 / 9e-58 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10014966 [exp] 179 / 2e-52 AT4G25740 216 / 5e-71 RNA binding Plectin/S10 domain-containing protein (.1.2) Lus10038395 [exp] 179 / 3e-52 AT3G12720 233 / 2e-75 myb domain protein 67 (.1) Lus10001226 [exp] 177 / 2e-51 AT3G12720 231 / 8e-75 myb domain protein 67 (.1) Lus10039610 [exp] 180 / 3e-51 AT5G12870 219 / 3e-69 myb domain protein 46 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G132000 [exp] 265 / 1e-84 AT1G63910 317 / 2e-107 myb domain protein 103 (.1) Potri.001G099800 [exp] 263 / 4e-84 AT1G63910 319 / 3e-108 myb domain protein 103 (.1) Potri.001G197000 [exp] 210 / 4e-63 AT3G13890 256 / 1e-82 MALE STERILE 35, myb domain protein 26 (.1.2) Potri.017G146700 [exp] 199 / 4e-61 AT4G25740 180 / 1e-58 RNA binding Plectin/S10 domain-containing protein (.1.2) Potri.005G040100 [exp] 196 / 3e-60 AT4G25740 177 / 2e-57 RNA binding Plectin/S10 domain-containing protein (.1.2) Potri.013G001000 [exp] 203 / 2e-59 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.015G082700 [exp] 200 / 2e-59 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.014G111200 [exp] 202 / 5e-59 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.005G001600 [exp] 201 / 9e-59 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.003G155700 [exp] 197 / 3e-58 AT3G12720 240 / 1e-77 myb domain protein 67 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF03501 [flax] [poplar] S10_plectin Plectin/S10 domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10024669 pacid=23161514 polypeptide=Lus10024669 locus=Lus10024669.g ID=Lus10024669.BGIv1.0 annot-version=v1.0 ATGGGGCACCATTCATGCTGCAACCAGCAGAAGGTGAAGAGGGGGCTCTGGTCTCCCGAAGAAGACGAAAAGCTCATTCGCTACATCACTACTCACGGCT ATGGCTGCTGGAGTGAAGTCCCCGAGAAAGCTGGGCTGCAGAGATGCGGCAAGAGCTGCCGGTTGCGGTGGATTAATTACTTGAGGCCTGATATTCGAAG AGGCAGATTTACACCTGACGAGGAGAAGTTGATCATCAGCCTCCATGGAGTTGTTGGCAACAGGTGGGCGCACATTGCGAGTCACTTACCCGGAAGAACG GACAACGAGATAAAAAACTACTGGAACTCCTGGATCAAGAAGAAGATACGGAAGCCACCGCCGCCTTCACCATCACCACCGTCGCTATCCTCATCATCAC CTTTACTCCTCCAAACTCCACCTTCCATCGCCACCCAACCACCTTGCACCGGCAGCGTTAGCGGTGCAACTCATCATCAGTTAGTTAACATAACCAGTTA CCAAACCTCCACCCATGTACTAGACCCGACCCATCAACCTGAACCGGGACCACGGGGGACCCACCTCTTCCCCTCAGCCGTTCAAGACGCCGTCTTTCAT CCTCCTCCTCCGCTACCATCAATGTTCATCTTCGACGGAGATCATCATCATCATCATCACCAGAACCAGCTCTTCATCGAACCGGTTTCCGGAAGTTGGA ATGATCACAACTTTCACCATCATAATCATAATCATAATCATCCTCCTCCTCAACAGTCCCATCAGCCCTTCGGATTTCTTCCCCCGTTGTTCGAGCACGA TGGGGACCACTTGGTGGGGTCCATGGAGGAAGTAGATCAGGAGGGGACGGCCGGGGCAAGGACGGTGATGATGAACGACGAGGAGTGGGCGGCGGCGGTG GATTCACGTCATGAGCCGTCGTCGGGGAACAATAGCTTCTTATTTTGGGAGGAAAATGACGTCGTTCTGGACGAGGGTGCGATTATTAGGTGCGGCGGGG ATAGTAATTTTACGGCAGCAATCATCTCCGAGAAGAACCGCCGCGAGATCTCCAAGTACCTCTTCCAAGAGGGAGTTTGCTATGCGAAGAAGGATTTCAA TCTGGCGAAGCATCCGGACATCGATGTCCCCAATCTTCAGGTGATTAAGCTTATGCAGAGCTTCAAGTCGAAGGAGTACGTCAGGGAGACGTTCGCCTGG ATGCATTATTACTGGTACCTCACCAACGAAGGAATTGAGTTCCTCCGTGCGTACCTGAATCTGCCTTCGGAGATCGTCCCTGCCACGTTGAAGAAGCAGG TTAAGGCCGGCGGAAGGCCACAATTCGGCGGTGATCGCCCACGTGGCCCTCCTAGGTCTGATGGAGAGAGGAGGTTCGGTGGTGATAGAGATGGCTACCG TAGTGGACCTAGAGCCCCTGGTGGCGATTACGGTGACAAGGGCGGTGCTCCTGCTGACTACAGACCAACTTATGGGGGATCTGGTCCAAGAGCTGGCTTT GGCCGCGGTGGAGGTAGCTATAGCGGTGGTGCTGCCACGAGCTCCGATCTTCCTTGA
AA sequence Show only first row Show all	>Lus10024669 pacid=23161514 polypeptide=Lus10024669 locus=Lus10024669.g ID=Lus10024669.BGIv1.0 annot-version=v1.0 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPDEEKLIISLHGVVGNRWAHIASHLPGRT DNEIKNYWNSWIKKKIRKPPPPSPSPPSLSSSSPLLLQTPPSIATQPPCTGSVSGATHHQLVNITSYQTSTHVLDPTHQPEPGPRGTHLFPSAVQDAVFH PPPPLPSMFIFDGDHHHHHHQNQLFIEPVSGSWNDHNFHHHNHNHNHPPPQQSHQPFGFLPPLFEHDGDHLVGSMEEVDQEGTAGARTVMMNDEEWAAAV DSRHEPSSGNNSFLFWEENDVVLDEGAIIRCGGDSNFTAAIISEKNRREISKYLFQEGVCYAKKDFNLAKHPDIDVPNLQVIKLMQSFKSKEYVRETFAW MHYYWYLTNEGIEFLRAYLNLPSEIVPATLKKQVKAGGRPQFGGDRPRGPPRSDGERRFGGDRDGYRSGPRAPGGDYGDKGGAPADYRPTYGGSGPRAGF GRGGGSYSGGAATSSDLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Lus10024669 [exp]	0	1
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Lus10032298 [exp]	2.0	0.9335
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10007979 [exp]	9.7	0.9003
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10002440 [exp]	12.2	0.8941
AT5G43670			Sec23/Sec24 protein transport ...		Lus10008801 [exp]	12.4	0.8541
AT1G24330			ARM repeat superfamily protein...		Lus10015801 [exp]	14.7	0.8826
AT5G35160			Endomembrane protein 70 protei...		Lus10019073 [exp]	15.0	0.8938
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Lus10031743 [exp]	16.5	0.8893
AT4G08810		SUB1	calcium ion binding (.1)		Lus10013761 [exp]	17.3	0.8995
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10020273 [exp]	17.5	0.8890
AT3G59970		MTHFR1	methylenetetrahydrofolate redu...		Lus10025610 [exp]	18.2	0.8887

Compare expression of checked genes

Lus10024669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.