Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23430 416 / 3e-146 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23420 409 / 2e-143 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G11410 399 / 8e-140 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 346 / 9e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02540 346 / 1e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 263 / 8e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G24050 247 / 8e-80 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64590 223 / 1e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27760 114 / 8e-29 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53090 111 / 2e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024647 [exp] 514 / 0 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032282 [exp] 511 / 0 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024648 [exp] 509 / 0 AT4G23430 447 / 2e-159 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10032281 [exp] 495 / 8e-178 AT4G11410 447 / 2e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024649 [exp] 495 / 2e-177 AT4G11410 446 / 5e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035481 [exp] 459 / 2e-163 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031101 [exp] 457 / 9e-163 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035480 [exp] 401 / 1e-140 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035479 [exp] 402 / 2e-140 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128700 [exp] 435 / 6e-154 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 419 / 9e-148 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 403 / 3e-141 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143600 [exp] 400 / 1e-139 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G103000 [exp] 378 / 1e-131 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G083900 [exp] 366 / 8e-127 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G143800 [exp] 363 / 1e-125 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.T124508 [exp] 258 / 5e-84 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.015G081102 [exp] 258 / 5e-84 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G087800 [exp] 246 / 3e-79 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10024685 pacid=23161641 polypeptide=Lus10024685 locus=Lus10024685.g ID=Lus10024685.BGIv1.0 annot-version=v1.0 ATGAAAGCTTTTATCGACGGCTTAAAACATGACAAATCAGTCAGGAATAGCCCTAACCAAAGTGCGTCAAGTGAGGAAACAAGATTGACGAGTCAACTAC AGAATGGATCACCAGGATCATCTGGGTTCTCAGGTTGCTCCACTGCCGAGCAAGTTACTAATGGAATCGACGCTACTGCTCTCACTGCAATCGTCACAGG AGCATCGAGTGGAATTGGTAAGGAGACAGCAAGAGTCCTTGCCCTGAGAGGTGCTCATGTGGTTATGGCGGTGAGAAATGTTGATGCTGGTAAGAGTGTC AAAGAAGAGATCCTTAAGGAAATCCCAAATGCTGAAGTTGACATCATGAAACTGGATCTCAACTCAATGGCATCAGTCAAGAAATTCGCCTCCGAATATA TCTCTTCAGGCCTTCCCCTGAATCTTCTCATTAACAATGCAGGCGTTATGTGTCCTTACATGCTTTCCACAGACAGCATAGAGATGCAATTTGCAACTAA CCATGTTGGACATTTTCTACTGACACATCTTTTGCTGGACACAATGAAGACGACTGCTCGTGATAGTAATCTCGAAGGAAGAATCGTTAACTTGTCATCA GAAGCACACAGTATTCCATACAAGGACGGGGTTCGTTTCGATAAGATCAACGACAAAGCAAAGTATAACACCTTGCGCGCTTATGGACAGTCAAAGCTCG CTAACCTTCTTCATGCTAATGAGCTCGCAAGGCGCTTCAAGGAAGAGGGAGTCAATATAACTGCCAATGCACTTCACCCTGGACACATACCAACAAACAT TTTTCGCCACACAGGAGTTATTAGTGGTGAACTCTCTCGATATCGCAATGTTCTTTTCGCCTCCTTGAAAGTGATAGGATCAGCAACTACATGCTATGTG GCATTGCATCCACAGGTGAAGGGATTAAGTGGAGAATACTTTCGTGACAGTAACGTATCGAAAGCAACCCCTCTGGCTAAAGATGAAGAGTTGGGGAGAA AGCTGTGGGATTTCAGCATGGAATTGATAAACCCTTTTTGCTGA
AA sequence Show only first row Show all	>Lus10024685 pacid=23161641 polypeptide=Lus10024685 locus=Lus10024685.g ID=Lus10024685.BGIv1.0 annot-version=v1.0 MKAFIDGLKHDKSVRNSPNQSASSEETRLTSQLQNGSPGSSGFSGCSTAEQVTNGIDATALTAIVTGASSGIGKETARVLALRGAHVVMAVRNVDAGKSV KEEILKEIPNAEVDIMKLDLNSMASVKKFASEYISSGLPLNLLINNAGVMCPYMLSTDSIEMQFATNHVGHFLLTHLLLDTMKTTARDSNLEGRIVNLSS EAHSIPYKDGVRFDKINDKAKYNTLRAYGQSKLANLLHANELARRFKEEGVNITANALHPGHIPTNIFRHTGVISGELSRYRNVLFASLKVIGSATTCYV ALHPQVKGLSGEYFRDSNVSKATPLAKDEELGRKLWDFSMELINPFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024685 [exp]	0	1
AT5G08100		ASPGA1	asparaginase A1, N-terminal nu...		Lus10017879 [exp]	1.7	0.9612
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017980 [exp]	3.5	0.9528
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10038205 [exp]	3.7	0.9349
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	5.1	0.9552
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	5.7	0.9392
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10010652 [exp]	6.3	0.9459
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030590 [exp]	8.8	0.9354
AT1G16310			Cation efflux family protein (...		Lus10001768 [exp]	9.0	0.9533
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012011 [exp]	9.5	0.9403
AT3G61660			unknown protein		Lus10033949 [exp]	9.8	0.9317

Compare expression of checked genes

Lus10024685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.