Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64110 1157 / 0 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT4G28000 1061 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52882 1055 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G02890 505 / 2e-162 AAA-type ATPase family protein (.1.2) AT4G02480 485 / 9e-155 AAA-type ATPase family protein (.1) AT4G24860 461 / 8e-147 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G62130 442 / 1e-140 AAA-type ATPase family protein (.1) AT3G19740 389 / 6e-121 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 372 / 1e-114 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G27680 280 / 2e-86 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028752 [exp] 1349 / 0 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10017535 [exp] 1344 / 0 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10039309 [exp] 1057 / 0 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027551 [exp] 1053 / 0 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010282 [exp] 484 / 1e-154 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10036347 [exp] 478 / 4e-152 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10010204 [exp] 385 / 3e-119 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017405 [exp] 374 / 7e-115 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013429 [exp] 371 / 4e-113 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G097600 [exp] 1206 / 0 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G133700 [exp] 1187 / 0 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.012G035400 [exp] 1103 / 0 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G026900 [exp] 1078 / 0 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G131000 [exp] 505 / 8e-163 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G205900 [exp] 503 / 9e-162 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.012G096300 [exp] 501 / 1e-160 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.015G094100 [exp] 490 / 9e-157 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.007G069800 [exp] 365 / 1e-111 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G093300 [exp] 361 / 2e-110 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10024692 pacid=23161622 polypeptide=Lus10024692 locus=Lus10024692.g ID=Lus10024692.BGIv1.0 annot-version=v1.0 ATGGAGCAGAGACAGTTTCTCTGGTCGGCGTTGGGAGTCGGCGTCGGAGTAGGAGTGGGACTAGGGTTGGCGTCGCCGACGGTGAGCAAATGGACCGGCG TGAGTTCGTTGTCGAACGGCGTGACGGGAGACAAATTGGAGCAGGAACTAGCGAGACAAGTTATTGACGGAAGAGAAGCCGGTGTTACTTTCGCCGAATT CCCTTACTACCTCAGTGATCAGACTCGAGTATTGCTGACGAGTGCGGCGTATGTGCACTTGAAGCACGCTGAAGTTTCAAAGTACACAAGGAATCTTTCA CCAGCTAGTCGAACTATACTGCTCTCCGGCCCTGCAGAACTCTACCAGCAAATGCTTGCCAAAGCTCTAGCTCATTACTTCGATGCCAAGCTGCTGCTGC TAGATGTAACCGATTTTTCTCACAAGATTCAGAGCAAGTACGGCACAAGCAAGGACTCTGGTTTCAGCAAGTCCACTTCAATGGAGAGGCTGTCGGATTT CCTGGGTTCTTTTTCCATACTGCAGCAGGATAAGGAACCCAAAGATTCTGGTACATTACGCAGGCAACACAGTGGGGTGGATCTCTCATTATCAAGGGGA ATGGAAGATTCCTCTAATCTTCCCAAGCTACGGAGAAATGCCTCTGCTGCTGCTAATATAAACACACTTGCGTCGCAATCCACTTCCTCCAATACAGCTC CTTTGAGGCGACAGAGCAGTTTGGCGTTTGATGAGAAACTTCTCATACAGTCTCTTTACAAGGTTCTGGCGTATGTCTCCAAAACTAGTCCCATAGTGCT GTATCTTAGGGACGTCGACAAGTTCTTATCCCGGTCGCAAAGAATCTATAACTTGTTCCATAAAATGCTAAACAAGCTTTCTGGTTCAGTTCTGATCCTC GGTTCGAGAAGTGTAGATCTGGGAAATGAGTACCGGGAGGCGGATGAGAAGCTTACTTTGCTGTTCCCATATAACATCGAGATCCAGCCACCTGAAGATG AAAACCAGCATATCAATTGGAAGTCCCAGCTGGAGGAGGATATGAAGATGATCCAGGTTCAAGACAATAGGAACCATATTGTGGAAGTCCTTTCGGCTAA TGACCTCGACTGTGATGATCTGGATACTATCTGTATGGCAGACACAATGGTTCTGAGTAACTATATAGAGGAAATTATTGTGTCTGCAATTTCTTATCAT CTGATGCATAACAAGGATCCTGATTACCGCAATGGAAAACTTATCATATCATCTAAGAGTTTGTCCCATGGATTGAGCATATTCCAGGAAAGCAAATCTG TTGGAAAAGTTACTTTGAAGTTAGAAGTTCAGGCTGAACTTCCCAAGAAAGAAGGGAGTGAACCTGCAGCTAATGCGAAGCCAGAAGAAAAAGCTGAAAC TGTAATTCCTGAAAAGAAGGATGAATCAGGGACACCAAAATCTGTTAAACCAGAGGCAAAGGCTCCAGAGGTTCTTCCGGACAACGAATTTGAGAAGCGC ATAAGACCAGAAGTCATACCAGCAGATGAGATCAATGTTACATTCAACGACATTGGCTCTCTGGAGGAAATCAAGGAATCGCTTCAGGAACTAGTCATGC TACCTCTCAGACGACCCGACTTATTCAAGGGTGGACTCCTAAAGCCATGCAGGGGAATTCTGCTATTTGGACCGCCTGGCACAGGGAAGACAATGCTGGC CAAGGCCATTGCCAGGGAAGCTGGAGCTAGCTTCATTAATGTGTCCATGTCTACAATAACATCTAAATGGTTCGGTGAAGATGAAAAGAATGTCCGAGCT TTGTTCTCACTCGCTGCCAAAGTCTCCCCAACGATCATTTTCGTGGATGAGGTTGATAGCATGCTTGGCCAGCGGACCAGGGTCGGTGAACATGAAGCCA TGAGGAAGATCAAGAATGAGTTTATGACTCACTGGGATGGCCTGACCACAAAACAAGGCGAGCGAATCCTTGTTCTTGCTGCTACTAATCGACCATTCGA TCTAGACGAGGCTATCATCAGACGTTTCGAGCCCGAGATAATGGTCGGCCTCCCTTCGGTGGAGAACCGAGAAATGATATTGAAGACTCTTCTGTCAAAG GAAAAGGTCGATGAACAACTAGATTTCAAGGAGCTTGCAACCCTGACAGAAGGGTTCTCAGGAAGTGATCTAAAGAACTTGTGTACTACCGCTGCTTATC GGCCAGTTCGAGAGTTGATACAGCAAGAAAGGTCCAGAGACATGGAGAAGAAGAAGAAAGCTGCAGAAGCACAAAAAACAGATGAAACGACAGAGGTACA AGAGACCAAGGAGGAAAGAGTAATCACCCTCAGGCCATTGAACATGGAAGATTTCAGGCTGGCTAAGAATCAGGTGGCTGCAAGCTTTGCATCTGGAGGA TCGATAATGGCAGAGTTGAAACAGTGGAATGACCTGTATGGTGAAGGTGGCTCAAGGAAAAAGGAGCAGTTGTCTTACTTCATGTAG
AA sequence Show only first row Show all	>Lus10024692 pacid=23161622 polypeptide=Lus10024692 locus=Lus10024692.g ID=Lus10024692.BGIv1.0 annot-version=v1.0 MEQRQFLWSALGVGVGVGVGLGLASPTVSKWTGVSSLSNGVTGDKLEQELARQVIDGREAGVTFAEFPYYLSDQTRVLLTSAAYVHLKHAEVSKYTRNLS PASRTILLSGPAELYQQMLAKALAHYFDAKLLLLDVTDFSHKIQSKYGTSKDSGFSKSTSMERLSDFLGSFSILQQDKEPKDSGTLRRQHSGVDLSLSRG MEDSSNLPKLRRNASAAANINTLASQSTSSNTAPLRRQSSLAFDEKLLIQSLYKVLAYVSKTSPIVLYLRDVDKFLSRSQRIYNLFHKMLNKLSGSVLIL GSRSVDLGNEYREADEKLTLLFPYNIEIQPPEDENQHINWKSQLEEDMKMIQVQDNRNHIVEVLSANDLDCDDLDTICMADTMVLSNYIEEIIVSAISYH LMHNKDPDYRNGKLIISSKSLSHGLSIFQESKSVGKVTLKLEVQAELPKKEGSEPAANAKPEEKAETVIPEKKDESGTPKSVKPEAKAPEVLPDNEFEKR IRPEVIPADEINVTFNDIGSLEEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIAREAGASFINVSMSTITSKWFGEDEKNVRA LFSLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLTTKQGERILVLAATNRPFDLDEAIIRRFEPEIMVGLPSVENREMILKTLLSK EKVDEQLDFKELATLTEGFSGSDLKNLCTTAAYRPVRELIQQERSRDMEKKKKAAEAQKTDETTEVQETKEERVITLRPLNMEDFRLAKNQVAASFASGG SIMAELKQWNDLYGEGGSRKKEQLSYFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Lus10024692 [exp]	0	1
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10015386 [exp]	6.0	0.8996
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10002419 [exp]	6.1	0.9247
AT5G27920			F-box family protein (.1)		Lus10029869 [exp]	7.5	0.8884
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10018575 [exp]	11.2	0.9229
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10006317 [exp]	12.8	0.9055
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10041055 [exp]	14.1	0.9116
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	18.3	0.9024
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021936 [exp]	19.4	0.8976
AT3G45260	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10007409 [exp]	22.4	0.8905
AT5G50375		CPI1	cyclopropyl isomerase (.1.2)		Lus10038969 [exp]	22.9	0.8876

Compare expression of checked genes

Lus10024692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.