Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02050 588 / 0 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT2G40540 540 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT5G14880 478 / 9e-159 Potassium transporter family protein (.1) AT4G23640 436 / 2e-142 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1) AT1G60160 398 / 1e-127 Potassium transporter family protein (.1) AT2G30070 332 / 2e-103 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT1G70300 303 / 7e-92 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT2G35060 253 / 3e-73 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 252 / 5e-73 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT4G13420 237 / 2e-67 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032327 [exp] 1357 / 0 AT2G30070 635 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Lus10014531 [exp] 585 / 0 AT5G14880 1098 / 0.0 Potassium transporter family protein (.1) Lus10012888 [exp] 577 / 0 AT5G14880 566 / 0.0 Potassium transporter family protein (.1) Lus10030857 [exp] 556 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030539 [exp] 553 / 0 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10029050 [exp] 551 / 0 AT2G40540 563 / 0.0 potassium transporter 2 (.1.2) Lus10012992 [exp] 548 / 0 AT1G70300 1188 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 547 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10034215 [exp] 528 / 2e-175 AT2G40540 1239 / 0.0 potassium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147400 [exp] 569 / 0 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.013G083400 [exp] 529 / 2e-178 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.003G133900 [exp] 517 / 5e-174 AT4G23640 947 / 0.0 TINY ROOT HAIR 1, Potassium transporter family protein (.1) Potri.005G095900 [exp] 442 / 1e-145 AT2G30070 769 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.010G094400 [exp] 416 / 6e-134 AT1G60160 1209 / 0.0 Potassium transporter family protein (.1) Potri.014G144900 [exp] 384 / 2e-122 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 376 / 5e-119 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.001G069650 [exp] 343 / 1e-106 AT4G13420 951 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G045200 [exp] 340 / 1e-105 AT4G13420 978 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.009G073500 [exp] 326 / 1e-100 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10024709 pacid=23161611 polypeptide=Lus10024709 locus=Lus10024709.g ID=Lus10024709.BGIv1.0 annot-version=v1.0 ATGATGCTGAATTTGTTGTGGTTTAAGCAGGATGAGAATAAGGCTCGAAGCAAGCATTTTCTTTTGTTAGTGTATCAGAGTATTGGCATAGTGTTTGGAG ACTTGGCAACTTCCCCTCTGTATGTTTATAGAAGTGCATTTGCGGGAAGGTTGCGCCATTATCGAACCGAAGAGGCAGTTTTCGGGGCTTTCTCCGTCAT CTTTTGGACCCTCTCGTTCTTTTCGTTGTTTAAATATGCTGTCTTCATGCTCAATGTAAACGATAACGGTGAAGGTGGGATTTTTGCTTTATATTCACTT CTTTGCAGGCATGGGAAGTTTTCCTTGCTCCCTAATCAACAGGCTTCAGATGAGGAGCTTTCGACATACCAGCATGCAGGATACTCTAATAAAAGCGTGC CTGCCTCTTCGTTCAAAAGGATTACCGATAGAGATAAGAAGTCAAAGTTAGCCCTACTTGTGCTGGTGCTGATGGGTGCTAGCATGGCCATGACTCTAGG CGTCCTTACACCAGCAATTTCCGTTGTTTCATCCATTGAAGGCCTCAAAGTTCAGTCAAATGATCTGAATCACAGAATCATGGTGGTCATTGCTGGCATT TTACTAGTCAGCCTTTTCGTCTTGCAATATCAAGGCACGCATAAGGTGGCTTTCATCTTTTCTCCAGTTATTATTCTCTGGTTGTTGTCCAGCGCTGCTC TTGGTGTCTATAATATCATTCTCTGGAATCCTAGAATATATGAGGCTCTTTCTCCAGTATACATCTACAAGTTCTTCCGACTCACTGGCATTGATGGCTG GATTTCTCTTGGAGGAGCTCTTTTATGTATTACTGGAATTGATATTTTGTTTACGGATCTCGGCCAATTCTCAGCTTCATCAATTAGGGTTGCGTATTGT TTTGTTGTGTACCCATGTTTAGTGCTCCAATATATGGGACAGGCTGCATTTCTTTCAAAGAATTTTTCTGCAATATCCTTGAGCTTCTACGCTTCAGTTC CAGTCACCCTCGGTTCTCAAGATACAACACGTATTGGAAACGCTTATGGGATAGCATCAATGACACTGATATTCATTACGACTTGCCTGATGTCTTTGGC AATCTACTTTGTATGGCACAAGGGATTGATGCTTGCTGTTTCATTCTTCTTATTTTTCGGAACAATCGAGATCATCTTTCTCTTTTCATCGTACGTAAGA ATCCTGCAAGGAGGATGGGTTCCCCTCGTGCTATCTGCCGTCTTTTTGTTCACCATGTTCGTTTGGCACTACGGTAGCAGGAAGAAGTACCTCTACGATC AACACCACAAATTGCCGATGAAATGGATCCTCACCCTCGGTTCAGATCTCGGCATTGTAAGGATCCCCGGAATAGGACTCATCTACACTCACTTAGCAAA CGGAGTTCCAGCTACTTTCTCCCATTTCCTCACAAACCTACCGGCATTTTACCAAGTGATTGTGTTCGTCTGCAACAAGACTGTCCCCGTTCCTTTCGTC CCCCAAAAGGAACGATATCTCGTCGGAAGAATAGGCCCCAAATCATACAGAATGTACCGTTGCATCGTTCAAAATGGTTACAAAGATGTCAACGATAACG AGGTCGAGGATGACTTTGAGAACGCCCTAATAATGAGCATAGCCGAGTTCATCCAGCTTGAAGCAGAAGGTTGCGGTACTCCCGATGGTTCGATGGGGGG TCGTTTGGCAGTCGTGAAATCATCCGAGAATTTTGGAAAACGGTTCGGGATTTCTCAGTCTAACGGCATTGGCGAGAGCAGCAAGTCGCTGAACATAACC AGCAGCAAATCGGCGACACTGCAGAAGCTGAAGTCCATGTACGACGAGCAGGAAGCACCGAAGCTAACGTATCGACGCAGAATCCAGCTGAAGCTACTGG ACGCGAGCTACAAGGACTCGTACGTGAAAGATGAAGTGATGAAGCTGATGGATGCTAAGAATTTCGGGGTGGCGTATGTCATAGGGCATTCGAACAGCAA GGCGAAGTGGAATTCGCCTTTCCTGAAGAGGTTTCTGATCAACATTGTCTACTCTTTCTTGAGGAAGAACTGCAGAGCTCCTTCTGTGACTCTGTCGATT CCTCAGACCTCGTTGATCGAGGTTGGTATGAACTACTCGCTGTAA
AA sequence Show only first row Show all	>Lus10024709 pacid=23161611 polypeptide=Lus10024709 locus=Lus10024709.g ID=Lus10024709.BGIv1.0 annot-version=v1.0 MMLNLLWFKQDENKARSKHFLLLVYQSIGIVFGDLATSPLYVYRSAFAGRLRHYRTEEAVFGAFSVIFWTLSFFSLFKYAVFMLNVNDNGEGGIFALYSL LCRHGKFSLLPNQQASDEELSTYQHAGYSNKSVPASSFKRITDRDKKSKLALLVLVLMGASMAMTLGVLTPAISVVSSIEGLKVQSNDLNHRIMVVIAGI LLVSLFVLQYQGTHKVAFIFSPVIILWLLSSAALGVYNIILWNPRIYEALSPVYIYKFFRLTGIDGWISLGGALLCITGIDILFTDLGQFSASSIRVAYC FVVYPCLVLQYMGQAAFLSKNFSAISLSFYASVPVTLGSQDTTRIGNAYGIASMTLIFITTCLMSLAIYFVWHKGLMLAVSFFLFFGTIEIIFLFSSYVR ILQGGWVPLVLSAVFLFTMFVWHYGSRKKYLYDQHHKLPMKWILTLGSDLGIVRIPGIGLIYTHLANGVPATFSHFLTNLPAFYQVIVFVCNKTVPVPFV PQKERYLVGRIGPKSYRMYRCIVQNGYKDVNDNEVEDDFENALIMSIAEFIQLEAEGCGTPDGSMGGRLAVVKSSENFGKRFGISQSNGIGESSKSLNIT SSKSATLQKLKSMYDEQEAPKLTYRRRIQLKLLDASYKDSYVKDEVMKLMDAKNFGVAYVIGHSNSKAKWNSPFLKRFLINIVYSFLRKNCRAPSVTLSI PQTSLIEVGMNYSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Lus10024709 [exp]	0	1
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10009770 [exp]	2.0	0.8458
AT3G12010			unknown protein		Lus10017227 [exp]	2.2	0.8587
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Lus10032327 [exp]	3.9	0.8369
AT2G16365			F-box family protein (.1.2.3.4...		Lus10023554 [exp]	4.9	0.8367
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10033446 [exp]	5.5	0.8221
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039926 [exp]	6.2	0.8439
AT4G10430			TMPIT-like protein (.1.2.3)		Lus10017356 [exp]	6.5	0.8226
AT4G01000			Ubiquitin-like superfamily pro...		Lus10010125 [exp]	6.9	0.8401
AT1G69360			Plant protein of unknown funct...		Lus10037122 [exp]	9.5	0.8342
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001628 [exp]	11.5	0.7844

Compare expression of checked genes

Lus10024709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.