Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79800 141 / 2e-42 AtENODL7 early nodulin-like protein 7 (.1) AT3G20570 96 / 2e-24 AtENODL9 early nodulin-like protein 9 (.1) AT5G14345 91 / 2e-23 AtENODL21 early nodulin-like protein 21 (.1) AT1G48940 91 / 4e-23 AtENODL6 early nodulin-like protein 6 (.1) AT2G25060 88 / 1e-21 AtENODL14 early nodulin-like protein 14 (.1) AT3G18590 87 / 2e-21 AtENODL5 early nodulin-like protein 5 (.1) AT5G53870 88 / 1e-20 AtENODL1 early nodulin-like protein 1 (.1) AT5G57920 84 / 2e-20 AtENODL10 early nodulin-like protein 10 (.1) AT4G31840 82 / 9e-20 AtENODL15 early nodulin-like protein 15 (.1) AT2G23990 81 / 9e-19 AtENODL11 early nodulin-like protein 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018758 [exp] 267 / 3e-92 AT1G79800 142 / 2e-43 early nodulin-like protein 7 (.1) Lus10037575 [exp] 155 / 1e-47 AT1G79800 127 / 4e-37 early nodulin-like protein 7 (.1) Lus10011433 [exp] 154 / 3e-47 AT1G79800 124 / 4e-36 early nodulin-like protein 7 (.1) Lus10014880 [exp] 91 / 1e-22 AT3G18590 144 / 1e-43 early nodulin-like protein 5 (.1) Lus10032111 [exp] 89 / 5e-22 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1) Lus10022318 [exp] 88 / 1e-21 AT3G18590 146 / 4e-45 early nodulin-like protein 5 (.1) Lus10026880 [exp] 88 / 1e-21 AT5G25090 167 / 8e-53 early nodulin-like protein 13 (.1) Lus10003432 [exp] 87 / 4e-21 AT5G25090 167 / 5e-53 early nodulin-like protein 13 (.1) Lus10009617 [exp] 80 / 9e-19 AT3G18590 148 / 1e-45 early nodulin-like protein 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G187700 [exp] 166 / 3e-52 AT1G79800 176 / 2e-56 early nodulin-like protein 7 (.1) Potri.003G050500 [exp] 156 / 3e-48 AT1G79800 162 / 1e-50 early nodulin-like protein 7 (.1) Potri.006G184100 [exp] 93 / 7e-24 AT4G31840 174 / 5e-56 early nodulin-like protein 15 (.1) Potri.011G135400 [exp] 89 / 4e-22 AT3G20570 138 / 4e-41 early nodulin-like protein 9 (.1) Potri.006G264600 [exp] 88 / 6e-22 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.011G117800 [exp] 91 / 1e-21 AT5G53870 158 / 3e-45 early nodulin-like protein 1 (.1) Potri.018G018200 [exp] 86 / 3e-21 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.015G052000 [exp] 86 / 7e-21 AT1G48940 163 / 1e-51 early nodulin-like protein 6 (.1) Potri.001G338800 [exp] 84 / 2e-20 AT5G14345 145 / 6e-45 early nodulin-like protein 21 (.1) Potri.017G011200 [exp] 81 / 8e-19 AT4G32490 157 / 2e-48 early nodulin-like protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10024846 pacid=23178940 polypeptide=Lus10024846 locus=Lus10024846.g ID=Lus10024846.BGIv1.0 annot-version=v1.0 ATGAAGAACAACAACAAAGCAACAGCAGCAGCAGCTGTCTTACTCATTTTGATAGCATCATCGATCATGCATTCTGCTGCTGCAAGAGTGTTCAAAGTCG GCGACGATTTCGGCTGGCAACAACCATCTAACAACAACTCCCAGATTTACCCTCAGTGGGCCACCTCCAACAGATTCCAAGTCGGAGATTCCCTCTTGTT CGAGTACAAGAACGACTCAGTAGCACAAGTGGATAAATGGGGATACTACCACTGCAACATCACCAGCACATCAATGGTGGTTTTCGACAATGGAAGGAGC ACTTTAAAGCTTGACCAGCCTGGACCTTTCTACTTCATCAGTGGCAACTTCAACCATTGTCAGAATGGACAGCTTCTTCTGTTAGAAGTTATGTCAACTC ACCATACTTACCATCCCACCATGGCGCCTTATCCTTCAGCCTTTCCTCCGAGTTACACGAATCCTTCGGAAGGGTCTTCATCATCATCACCGTCTAGTGA TGCTGATCAGCCAAACTCGGCAGCCATTGTTTCGGTTGTATCGAGTTCAGTGGCGGTTGTTCTTATTGCCACATTTGTTGCTTTGGCATGGTTTGCACCA TGA
AA sequence Show only first row Show all	>Lus10024846 pacid=23178940 polypeptide=Lus10024846 locus=Lus10024846.g ID=Lus10024846.BGIv1.0 annot-version=v1.0 MKNNNKATAAAAVLLILIASSIMHSAAARVFKVGDDFGWQQPSNNNSQIYPQWATSNRFQVGDSLLFEYKNDSVAQVDKWGYYHCNITSTSMVVFDNGRS TLKLDQPGPFYFISGNFNHCQNGQLLLLEVMSTHHTYHPTMAPYPSAFPPSYTNPSEGSSSSSPSSDADQPNSAAIVSVVSSSVAVVLIATFVALAWFAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79800		AtENODL7	early nodulin-like protein 7 (...		Lus10024846 [exp]	0	1
					Lus10012045 [exp]	1.7	0.8056
AT5G27750			F-box/FBD-like domains contain...		Lus10004848 [exp]	3.2	0.6836
AT5G42905			Polynucleotidyl transferase, r...		Lus10007550 [exp]	5.7	0.7763
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10010475 [exp]	6.2	0.7497
					Lus10034814 [exp]	9.8	0.7056
AT4G16640			Matrixin family protein (.1)		Lus10037419 [exp]	13.6	0.6825
AT1G25275			unknown protein		Lus10004192 [exp]	16.0	0.6407
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10008198 [exp]	18.2	0.6035
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10006147 [exp]	25.2	0.5945
AT1G21000			PLATZ transcription factor fam...		Lus10005350 [exp]	25.9	0.5937

Compare expression of checked genes

Lus10024846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.