Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27170 310 / 7e-88 transmembrane receptors;ATP binding (.1.2) AT5G36930 306 / 6e-87 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 288 / 4e-80 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 270 / 3e-74 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G17680 267 / 1e-73 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G16890 266 / 3e-73 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G16920 257 / 3e-70 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16950 257 / 4e-70 RPP5 RECOGNITION OF PERONOSPORA PARASITICA 5, Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT2G14080 253 / 4e-69 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G25510 246 / 2e-66 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038533 [exp] 1035 / 0 AT1G27170 386 / 7e-114 transmembrane receptors;ATP binding (.1.2) Lus10023272 [exp] 855 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10038482 [exp] 789 / 0 AT1G69550 386 / 3e-113 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10017143 [exp] 783 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10035674 [exp] 769 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 763 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020238 [exp] 746 / 0 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10029860 [exp] 743 / 0 AT5G36930 395 / 1e-118 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10010574 [exp] 736 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G104301 [exp] 356 / 1e-103 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.012G135700 [exp] 349 / 9e-103 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 344 / 1e-100 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G053200 [exp] 347 / 2e-100 AT1G27170 1187 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.013G037599 [exp] 342 / 4e-100 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 342 / 5e-100 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G002500 [exp] 343 / 6e-100 AT5G17680 587 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.T005501 [exp] 340 / 3e-99 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 339 / 3e-99 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G070700 [exp] 342 / 4e-99 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10024886 pacid=23178936 polypeptide=Lus10024886 locus=Lus10024886.g ID=Lus10024886.BGIv1.0 annot-version=v1.0 ATGCTTCTCCTTGCAGCCGCTGGCCTTGCACTCTCCCTCGTAAAGAAGAAGAAGTCGACCCCAACAACTATTTCCTCTCCTCCTTCTTGTGCAACAGCCT CTACTCCACCACTCCGTGATGCAGACCACGAGGTGTTCCTAAGCTTCCGAGGCCCCGACGTCCGTACAAATTTCGCCGATTTCCTCTACGAATTCCTCCG CAATTCCAAAATTCGGACTTTTCTCGACGAGGAAGGGATTCGCAAGGGGGCTGAAATTGAAGAATCGCTCTTCAATGCTATCAAAGAATCCAAGGTTTAC ATCCCGATAATTTCCCGAGATTACGCTTCCAGTACGTGGTGCCTTCGGGAGCTGGCTTACATGGTCAAGATCTGCAACCAAGGAAACGGTAGCATCATAC TCCCAATTTTCTACATGGTGGAGCCTAGAGATGTGAGGCATCACAATGATTCTTACGCCAAAGCGTTTCGACGGCACAGTGAGAATAAGAAATACGGTCC CCAAACTATCCAAGAATGGAAAGACGCTCTCCTGGCCGTCGGGGAATTGAAGGGATGGCACGTCACCCCGTCCCATCGACAGGGAGCTATAGCAAGAGAA GTTTTTTCCTGTGTAAGGTCACATTTAATGAAGGATTATCTTCTAGTGAGGGAGAAGTTGGTTGGTATTAAGTATCATGTTGAACAAGTGACAAAGCTCT TGAACCAAGGTGTCAAAGTTATTGGCATCATTGGTATGGGTGGTCTAGGTAAGACGACTATGGCTATGGCCGTCAGAGATGAAGTATATAAACAGTTTGA TTACTGCTTCTTTTTAAGAGATGTAAGAGAAACATTGCTAAACAATGGAGGCATTGTGGCTCTGCAAAGGCAAATCATATCTGCCATACCGGGTCAGGAT GGAAATGTTCAAGACGAGAGTCAAGGAATTCAGGTGATAAAAGATAGGGTATCGGAGCGCAAGACTCTTATCGTTGTCGATGACGCCGATGAAGGATTCA AGTTTGAAAAGATATTCGGGAGGTTGGAGGACTTTTCTCCAGAAAGTCGGTTCATAATTACCACGAGGAACAAAAGAGTTCTTCAGCTTTTCCGAGATAA GTTGTTGTACGAACCCGACGAATTGGGTTTTGAGCATTCGCGGCAACTTTTTAGCCTACATGCTTTTGGATTGGATAATCCTCCGGAAGGCTGGGTAGAT CTATCTGATCAGTTCGTAAAAGCAGCAACATGTCTCCCTTTAGCAATTAAAGTCATAGGTGCAACCTTGTATGACAGAGAAGAATGGTTTTGGGAAGCAA AACTGGAGCAACTAAGAAAAATACCTCAGGGTGAGGTGCAAAAGAGGTTGATGATAAGTTATGAGGACCTGTCACGCGAGGAAAAACAAATATTTCTCGA TATTGCTTGTCATTTTATTGGACTAGAAAAGGAAAAACCTTTTTATATGTGGAGGGACTGTGATTATTTCCCGGAAATTGGGGTTGATGCCCTTATTCTG AAGTCATTGGTGAAAATTAATGAGGAAAATGAATTTTGGATGCATGATTCTATAAGAGATCTTGGCAGAGCTATTGTACGTGAGGAAGATCCTCAATTTC CATGGAGGTGCAGCAGAATATGGAGCGACCAAGATGCGCAAAAGATGATAGCATATGATGGAGAGGCAAGCGAACGATTGGAAGTTTTCAGTGTTAAAAT GGAAAAAGACGTGAAGCTGGCAGATACATTTTTTCACAAATCGTCGAGTTTAAGGCATCTGAAAGTGTTTTATGGAGAGTTTGAGGGGAATTTTGAAAGC ATTCTTCCAAATCTGCGTTGTCTTGAACTGAGTCATTGCCGCTCACTCCCAATTGACATTAGTTTGAAGAGATTAGTAATTATCCGTCTCCATCACTGCT GTGTAACAGATAATTGGAGCGGTTGGGGGAAGATAAAGGCGGCACGAAATCTGAAAGCTATAGATGTACAGGACTGCTGGAACATACGAAAGTTTCCGGA CTTGTCTGGATGTATAAATCTGGAGTTGTTGAATTTCACTTGGGTCCATGCTATGAGTGGGAAGCTGCAGATTGGCAATTTAAAGAGTCTCAAATACTTG AAGGTAGACGGTTCAAAGAAAATCGAGTTAATCGGTGACATTCGAGGGCTTCGAAATCTGCAAGAGATTCACATGACAAGTTTGGAACTAATACCAAGCG GTATAGGCGGATTACCTGCCCTGCAAGTCTTGAAAATCCGTCGCTCGAAGTTTAATCACGTACCTGAACTCCCGACCAGCTTAAGGCGGTTATACCTTGT AACTCTATACATTCCCAATCTTGTTGAACTCACCAATTTGGAGACGTTGTATCTTCGCGATTACGAGCATTCACTACCTGCGGATATATGGAAGCTATCC AAGTTGAAGTCCCTGGTGCTTTCGAGCTTCCGTCACGAGAGTCTACTAATGGAGGATGATGGTCTGCTTCCATCATCTTTAGAAAAGCTTCAAATTTGTG ATTGCATTCCGCTGGAAAGGCTGCCGAGTCTTGCCAATCTCGTCAATTTGACACACTTGTTATTAAATAACACTGGGATAAAGGAAATTCGTGGTCTGGC AGGGTTGAGAAACCTGGAGAGATTTGAGATCCGAAGCGCTACAAAGTTGATGAATCTCCAAGGCCTTGAACAGCTAAGCCTTGTCAAGGAATTGATCCTC CGAGATTGTCACTCACTAGAGAAACTAAAACTACCCTGTCTGTTGAGTTTGACCAAGTTACAACGACTGGAGATCATGTCCTGTCCGCTCCTCGCTGAAT TTTCAGTACTATTATCTTCAACACTGGAGGTTCTGCAAATACAAGACTGCACGTCACTTGGAGAGTTGCCGAATCTATGCGGTCTGAAGAATATGGAATC GCTTCAAATACTTGGGTGTGTGAATCTGACTACTACCGAGCTGATAGGGGTAGATGAAATGGAAGCACTGCAACAACTGAACATCCGCGATTGCTCATCC CTCGAGAAGTTTCCGGATTTAGCTGGCTTCAAGCATTTGCAGATTTTGGAAATTTCAAGATGCAAGCTGTTGACTGAGGTGACGGGGTTGGAGAGATTGG AATCACTGAGGACGCTACAGATATCTCACTGCCCACTGATTGAGAACTTGCCTGATTTCTCTGGTTTGAAGGATTTGCGGCTTTTGTATGTCCTGGGATG CACACGCCTAACTCAAGTTACTGGAATTGAGAATCTGGCGGAATTAGGGTTTCTCACGATTGACGAGAGAATAAACATTCCAACGCTAGTATCGCAAGTA AGAATTGATCGGAGGAGTTAA
AA sequence Show only first row Show all	>Lus10024886 pacid=23178936 polypeptide=Lus10024886 locus=Lus10024886.g ID=Lus10024886.BGIv1.0 annot-version=v1.0 MLLLAAAGLALSLVKKKKSTPTTISSPPSCATASTPPLRDADHEVFLSFRGPDVRTNFADFLYEFLRNSKIRTFLDEEGIRKGAEIEESLFNAIKESKVY IPIISRDYASSTWCLRELAYMVKICNQGNGSIILPIFYMVEPRDVRHHNDSYAKAFRRHSENKKYGPQTIQEWKDALLAVGELKGWHVTPSHRQGAIARE VFSCVRSHLMKDYLLVREKLVGIKYHVEQVTKLLNQGVKVIGIIGMGGLGKTTMAMAVRDEVYKQFDYCFFLRDVRETLLNNGGIVALQRQIISAIPGQD GNVQDESQGIQVIKDRVSERKTLIVVDDADEGFKFEKIFGRLEDFSPESRFIITTRNKRVLQLFRDKLLYEPDELGFEHSRQLFSLHAFGLDNPPEGWVD LSDQFVKAATCLPLAIKVIGATLYDREEWFWEAKLEQLRKIPQGEVQKRLMISYEDLSREEKQIFLDIACHFIGLEKEKPFYMWRDCDYFPEIGVDALIL KSLVKINEENEFWMHDSIRDLGRAIVREEDPQFPWRCSRIWSDQDAQKMIAYDGEASERLEVFSVKMEKDVKLADTFFHKSSSLRHLKVFYGEFEGNFES ILPNLRCLELSHCRSLPIDISLKRLVIIRLHHCCVTDNWSGWGKIKAARNLKAIDVQDCWNIRKFPDLSGCINLELLNFTWVHAMSGKLQIGNLKSLKYL KVDGSKKIELIGDIRGLRNLQEIHMTSLELIPSGIGGLPALQVLKIRRSKFNHVPELPTSLRRLYLVTLYIPNLVELTNLETLYLRDYEHSLPADIWKLS KLKSLVLSSFRHESLLMEDDGLLPSSLEKLQICDCIPLERLPSLANLVNLTHLLLNNTGIKEIRGLAGLRNLERFEIRSATKLMNLQGLEQLSLVKELIL RDCHSLEKLKLPCLLSLTKLQRLEIMSCPLLAEFSVLLSSTLEVLQIQDCTSLGELPNLCGLKNMESLQILGCVNLTTTELIGVDEMEALQQLNIRDCSS LEKFPDLAGFKHLQILEISRCKLLTEVTGLERLESLRTLQISHCPLIENLPDFSGLKDLRLLYVLGCTRLTQVTGIENLAELGFLTIDERINIPTLVSQV RIDRRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10024886 [exp]	0	1
AT3G48340		CEP2	cysteine endopeptidase 2, Cyst...		Lus10033631 [exp]	1.0	0.9122
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10021012 [exp]	2.0	0.8893
AT1G76140			Prolyl oligopeptidase family p...		Lus10034558 [exp]	3.2	0.9003
AT1G09050			unknown protein		Lus10037506 [exp]	6.2	0.8957
AT4G13040	AP2_ERF		Integrase-type DNA-binding sup...		Lus10011836 [exp]	7.1	0.8715
AT1G06980			unknown protein		Lus10036859 [exp]	7.2	0.8283
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	8.2	0.8394
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10017683 [exp]	8.5	0.8613
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	12.2	0.8789
AT2G02000		GAD3	glutamate decarboxylase 3 (.1)		Lus10009116 [exp]	13.3	0.8634

Compare expression of checked genes

Lus10024886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.