Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28610 303 / 4e-99 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT5G29000 254 / 7e-80 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT3G04450 251 / 3e-79 GARP Homeodomain-like superfamily protein (.1.2) AT2G20400 215 / 2e-65 GARP myb-like HTH transcriptional regulator family protein (.1) AT5G06800 187 / 1e-54 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT2G01060 177 / 3e-52 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G13040 172 / 2e-48 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G24120 151 / 5e-42 GARP Homeodomain-like superfamily protein (.1.2) AT4G13640 150 / 1e-41 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT5G18240 144 / 2e-38 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022886 [exp] 841 / 0 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1) Lus10022885 [exp] 823 / 0 AT4G28610 299 / 2e-97 phosphate starvation response 1 (.1) Lus10008197 [exp] 321 / 2e-105 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10029607 [exp] 277 / 5e-88 AT5G29000 279 / 2e-89 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10032778 [exp] 273 / 5e-87 AT5G29000 272 / 2e-87 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10035705 [exp] 181 / 3e-51 AT3G13040 372 / 4e-125 myb-like HTH transcriptional regulator family protein (.1.2) Lus10037296 [exp] 174 / 1e-48 AT3G13040 364 / 5e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10039124 [exp] 168 / 2e-48 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10023816 [exp] 170 / 3e-48 AT5G06800 224 / 2e-70 myb-like HTH transcriptional regulator family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G257800 [exp] 431 / 7e-148 AT4G28610 332 / 6e-110 phosphate starvation response 1 (.1) Potri.013G048000 [exp] 305 / 4e-99 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.019G020900 [exp] 296 / 4e-96 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.006G191000 [exp] 198 / 1e-58 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G047900 [exp] 192 / 1e-56 AT5G06800 233 / 3e-73 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G000800 [exp] 176 / 6e-51 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.007G003200 [exp] 178 / 2e-50 AT3G13040 330 / 1e-108 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 173 / 3e-50 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.014G000700 [exp] 176 / 5e-50 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.001G228500 [exp] 160 / 1e-44 AT5G06800 179 / 3e-52 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10024938 pacid=23179000 polypeptide=Lus10024938 locus=Lus10024938.g ID=Lus10024938.BGIv1.0 annot-version=v1.0 ATGGAGGCACGGCCATCCTTATCCATGCAAAGATCAGGTGTGAATCAGCTTAGTAGTTTTGGTCTGTCTGGACCAATGTCCTCAGCATTTCCAGTTCTTC CTCTCTCCCCTGAAGATTCATATCCGAAGTTACCAACCTACCGGCAGGCTCCCATGGAAATGGACCGTACGGCAAGGTCCTCTTTGTCTTCTAACAGTGG TGCAGTGGGTCCCATCTTCTCATCATCTGCAGGCTTGTCAACAGGCTTCCAGTTCACTCCTGTCTCACTGCAAGAGAAAAACTCGAGTTATCCTTTCGTT TCATCTACAGACATGTCAACTTTACCAGTCCCACAATCTTCTCAGTCACAATTCCTTCCGCCCCCAACTTCAAGTCGCGATGCCAAGGGAAGCAGTGATT CCTGGTGTGCAGAGCCTTTGTCTGGTTTTCTAGATTTTCCTGTCTCTCCGGTGCAAACCAGTAAAATTGGCAGCAATAGTTGTAATGTCATTGTCTCTGA GGATATTTGCAAAAGAAATGACTGGCAGAATTGGGCGGACGAGTTAATTACCAGTGACGACTCGTTGACATCTACTTGGAATGAGCTTCTGGTTGACACC AATATTTCAGAAATGGGACCAAAGATAACATACCAGGTGCCCAAACCATCTCCATCTCCTGCTGCATCTGGTTTGGGGATCCGCCCTGCTCCTGTTGCAT CTCCTGCTCCTGCAGCAAGCAATGGCACATCGAAGTCACGCTTGAGGTGGACTCCTGAACTTCATGAATCCTTTGTTGAAGCTGTCAACCAGCTTGGCGG TAGCGAAAGAGCCACACCAAAAGGAGTGCTGAAGCTGATGAAAGTTGAAGGATTGACCATTTATCATGTAAAAAGTCACTTGCAGAAATACAGGACAGCT AGATATAGACCGGAGCCATCTGAAGGATCATCAGAGCAGAGACCGACTCCTATAGAACAATTATCATCCCTCGACTTGAAGACGGGTATCGAGATAACTG AAGCTCTGCGAATGCAAATGGAAGTCCAGAAGCGCCTGCACGAGCAGCTTGAGATCCAGAGGAATCTTCAGCTGCGTATTGAAGAACAAGGGAGAAACCT CCAAATGATGTTTGAGAAGCAGTGCAAGTCGGGCAGTGACAAGCTGAAAGCGGCATCATCACCATCCTTGGAGAATGCAGCAGGCGCCGTGCTGGCTTCT GATGCAGTTCTAGATTCAATCGGTACAGAAGCTGCCGTCTTAAAGGCAAACGAGACAGACAGCGACAGAACTGCTGTGATGTCTCCATTAGACGAAAGTC CAACGAGCCCTAGTGGGCCGCAAAGATCATCTCATGCCTCAGAGCCAGATGATCGCCTGTCAAACAAACGTGCAAGAAGTGATCCGTAA
AA sequence Show only first row Show all	>Lus10024938 pacid=23179000 polypeptide=Lus10024938 locus=Lus10024938.g ID=Lus10024938.BGIv1.0 annot-version=v1.0 MEARPSLSMQRSGVNQLSSFGLSGPMSSAFPVLPLSPEDSYPKLPTYRQAPMEMDRTARSSLSSNSGAVGPIFSSSAGLSTGFQFTPVSLQEKNSSYPFV SSTDMSTLPVPQSSQSQFLPPPTSSRDAKGSSDSWCAEPLSGFLDFPVSPVQTSKIGSNSCNVIVSEDICKRNDWQNWADELITSDDSLTSTWNELLVDT NISEMGPKITYQVPKPSPSPAASGLGIRPAPVASPAPAASNGTSKSRLRWTPELHESFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTA RYRPEPSEGSSEQRPTPIEQLSSLDLKTGIEITEALRMQMEVQKRLHEQLEIQRNLQLRIEEQGRNLQMMFEKQCKSGSDKLKAASSPSLENAAGAVLAS DAVLDSIGTEAAVLKANETDSDRTAVMSPLDESPTSPSGPQRSSHASEPDDRLSNKRARSDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Lus10024938 [exp]	0	1
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10032279 [exp]	4.7	0.7222
AT5G62040		BFT	brother of FT and TFL1, PEBP (...		Lus10027442 [exp]	11.9	0.7462
AT5G13825			unknown protein		Lus10001690 [exp]	14.7	0.7081
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10039024 [exp]	15.4	0.6350
					Lus10015031 [exp]	15.7	0.5947
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10031191 [exp]	22.2	0.6122
AT1G34630			unknown protein		Lus10043395 [exp]	23.5	0.6315
AT5G53110			RING/U-box superfamily protein...		Lus10003401 [exp]	23.9	0.5879
AT5G61730		ABCA9, ATATH11	ARABIDOPSIS THALIANA ABC2 HOMO...		Lus10042172 [exp]	25.3	0.5921
AT2G31600			unknown protein		Lus10025558 [exp]	33.6	0.5921

Compare expression of checked genes

Lus10024938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.