Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16110 186 / 3e-52 GARP ARR2 response regulator 2 (.1) AT3G16857 185 / 8e-52 GARP ARR1 response regulator 1 (.1.2) AT2G25180 177 / 3e-49 GARP ARR12 response regulator 12 (.1) AT2G01760 167 / 2e-47 GARP ARR14 response regulator 14 (.1) AT1G67710 159 / 4e-43 GARP ARR11 response regulator 11 (.1) AT5G58080 143 / 4e-37 GARP ARR18 response regulator 18 (.1) AT4G31920 140 / 3e-36 GARP ARR10 response regulator 10 (.1) AT5G49240 111 / 2e-27 GARP APRR4 pseudo-response regulator 4 (.1) AT3G62670 101 / 1e-23 GARP ARR20, MEE41 maternal effect embryo arrest 41, response regulator 20 (.1) AT1G49190 95 / 8e-21 GARP ARR19 response regulator 19 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010021 [exp] 293 / 2e-97 AT4G16110 91 / 9e-21 response regulator 2 (.1) Lus10016846 [exp] 189 / 4e-53 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10037719 [exp] 188 / 8e-53 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10005340 [exp] 185 / 5e-52 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10041020 [exp] 183 / 3e-51 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10019058 [exp] 174 / 1e-48 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10011389 [exp] 170 / 2e-48 AT1G67710 385 / 1e-130 response regulator 11 (.1) Lus10036303 [exp] 174 / 3e-48 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10006446 [exp] 169 / 2e-47 AT1G67710 377 / 9e-127 response regulator 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G001000 [exp] 188 / 6e-53 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G213500 [exp] 188 / 6e-53 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G135500 [exp] 187 / 2e-52 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G105600 [exp] 179 / 1e-49 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.010G053100 [exp] 174 / 2e-48 AT1G67710 380 / 2e-126 response regulator 11 (.1) Potri.008G181000 [exp] 171 / 3e-47 AT1G67710 383 / 5e-127 response regulator 11 (.1) Potri.006G188000 [exp] 171 / 9e-47 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.018G111300 [exp] 168 / 1e-45 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.018G021300 [exp] 166 / 5e-45 AT2G25180 364 / 2e-117 response regulator 12 (.1) Potri.006G262100 [exp] 161 / 3e-43 AT2G25180 381 / 6e-124 response regulator 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10025044 pacid=23148407 polypeptide=Lus10025044 locus=Lus10025044.g ID=Lus10025044.BGIv1.0 annot-version=v1.0 ATGGAGACTGCTCAGACGACAACACCAGTCGTCCATGTCGGAGAGAACACCAAGAACAAGTCAATTGATTACAATGAAGACAGTAGTTATCATCATCGTT TGCTTGTAAGTGAATATCCTGCTGGTTTGAAGGTTCTTCTCGTTGACGACGACGAGACTTGTCTTCTCATTCTTCGTCAAATGCTTCAACGCTGTTCGTT CCGAGTGACGACTTGTCAAAGGGCGAAGGATGCACTCGCAATGCTTCGGGACGATAAGTCCCAGTTCGACATTGTTGTCAGCGATGTACATATGCCAGAA ATAGACGGACTTAAGCTCCTTAAGATCGTAGCTTTTGAGATGGACCTCCCAGTCGTTCTTGTATCATCGGACGACGATCAGAGACTTGTGATGGAAGGAA TCCTTGGGGATGCTTGCGATTACCTGATAAAGCCCATTACAATGAACAATATTAAAACGATATGGCAGCACGTAGTTCGGAGGAGGAGAAGTAAAGCTCC CATGGACAATAGCCAGCCGCTTCCACGGTTGCCTCATCCCTTGATGAACAACAACAGCAAAGCGGAACTGTCCGATAAATGTACAGTTGATCACAATCAT AACAATGGAGCCGCTGCGAGTAGTGATAGCACAATCTCGATCCTTAAGAAAAGTAATGATGATGAGCAACTTGGTCGCGAAGATGGTGGTAGTGGTAGCA ACGACGATGGCAATAGTCAATTGACGACCAAAAGGAAGAAGAGGATGGTTTGGACTCAAGATTTACGTAACAAATTTGTTGATGCCATCAATTTTCTTGG TACTTCTTCAAATAATAATATAGTTCCTACCAAAATTCTTGAATGCATGCTTAAGATGGGTGTTGAAGGAATTACCCGTGAAAATGTTGCTAGCCACCTT CAGAAGTACAGAATGCAACGGCGAAGGCAACAGGAGCAGCAACATGAATCTTTATTACTTCACTCGTCATCTTCGCCAGACTTTCATCATCAATTTCATC CACCCTTCACAGTTGGATCTTGGGGTTCATCGGCATTTGCCCCTACTGCCATTAACATGACCGCCATCGACGAAGACGCTCTTGTTGATCACCATCACCA AATCAACAACAACATCAACGTCTCTCACTCACTCCCCATCAATATTAGAGCTGCCGGTGAAATGCTGGGTGAGAATTATAATTCTCATCCTCGTGTACTG TATGATCCGTATTTTAACCTCCAAAGCCAGTTGGATTATCAGATGGGCATTTTTCACGAGAATATGGTGAATAATGATGCACTAGGAAGCGCGGATGACA TGGAGAATCCATGGCAGTTTGATCAATAG
AA sequence Show only first row Show all	>Lus10025044 pacid=23148407 polypeptide=Lus10025044 locus=Lus10025044.g ID=Lus10025044.BGIv1.0 annot-version=v1.0 METAQTTTPVVHVGENTKNKSIDYNEDSSYHHRLLVSEYPAGLKVLLVDDDETCLLILRQMLQRCSFRVTTCQRAKDALAMLRDDKSQFDIVVSDVHMPE IDGLKLLKIVAFEMDLPVVLVSSDDDQRLVMEGILGDACDYLIKPITMNNIKTIWQHVVRRRRSKAPMDNSQPLPRLPHPLMNNNSKAELSDKCTVDHNH NNGAAASSDSTISILKKSNDDEQLGREDGGSGSNDDGNSQLTTKRKKRMVWTQDLRNKFVDAINFLGTSSNNNIVPTKILECMLKMGVEGITRENVASHL QKYRMQRRRQQEQQHESLLLHSSSSPDFHHQFHPPFTVGSWGSSAFAPTAINMTAIDEDALVDHHHQINNNINVSHSLPINIRAAGEMLGENYNSHPRVL YDPYFNLQSQLDYQMGIFHENMVNNDALGSADDMENPWQFDQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31920	GARP	ARR10	response regulator 10 (.1)		Lus10025044 [exp]	0	1
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10009583 [exp]	1.4	0.9966
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Lus10031007 [exp]	1.4	0.9987
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002774 [exp]	2.4	0.9964
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008441 [exp]	2.8	0.9855
					Lus10014195 [exp]	5.0	0.9818
					Lus10033900 [exp]	5.3	0.9445
AT5G13825			unknown protein		Lus10000042 [exp]	6.0	0.9798
					Lus10002411 [exp]	6.5	0.9748
AT1G71530			Protein kinase superfamily pro...		Lus10001470 [exp]	7.9	0.9666
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10042155 [exp]	8.7	0.9417

Compare expression of checked genes

Lus10025044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.