Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21050 866 / 0 LAX2 like AUXIN RESISTANT 2 (.1) AT1G77690 786 / 0 LAX3 like AUX1 3 (.1) AT2G38120 783 / 0 MAP1, WAV5, PIR1, AUX1 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) AT5G01240 766 / 0 LAX1 like AUXIN RESISTANT 1 (.1.2) AT5G41800 54 / 2e-07 Transmembrane amino acid transporter family protein (.1) AT5G02180 53 / 3e-07 Transmembrane amino acid transporter family protein (.1) AT1G08230 49 / 7e-06 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT5G02170 47 / 2e-05 Transmembrane amino acid transporter family protein (.1.2) AT2G39130 45 / 8e-05 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034488 [exp] 1018 / 0 AT2G21050 864 / 0.0 like AUXIN RESISTANT 2 (.1) Lus10028078 [exp] 787 / 0 AT1G77690 810 / 0.0 like AUX1 3 (.1) Lus10025628 [exp] 783 / 0 AT1G77690 808 / 0.0 like AUX1 3 (.1) Lus10004831 [exp] 765 / 0 AT2G38120 853 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10002498 [exp] 756 / 0 AT2G38120 842 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10028278 [exp] 735 / 0 AT2G38120 801 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10040212 [exp] 729 / 0 AT2G38120 798 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Lus10003903 [exp] 62 / 6e-10 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10039190 [exp] 59 / 4e-09 AT2G39130 652 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G132100 [exp] 915 / 0 AT2G21050 832 / 0.0 like AUXIN RESISTANT 2 (.1) Potri.004G172800 [exp] 889 / 0 AT2G21050 829 / 0.0 like AUXIN RESISTANT 2 (.1) Potri.002G087000 [exp] 813 / 0 AT1G77690 745 / 0.0 like AUX1 3 (.1) Potri.005G174000 [exp] 767 / 0 AT1G77690 776 / 0.0 like AUX1 3 (.1) Potri.010G191000 [exp] 765 / 0 AT2G38120 734 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.008G066400 [exp] 764 / 0 AT2G38120 746 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.016G113600 [exp] 746 / 0 AT2G38120 796 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.006G098300 [exp] 741 / 0 AT2G38120 795 / 0.0 WAVY ROOTS 5, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, AUXIN RESISTANT 1, Transmembrane amino acid transporter family protein (.1) Potri.009G149900 [exp] 74 / 9e-14 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.001G093600 [exp] 69 / 4e-12 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10025057 pacid=23167878 polypeptide=Lus10025057 locus=Lus10025057.g ID=Lus10025057.BGIv1.0 annot-version=v1.0 ATGGAAGCTGCAAACGGCGGCGATAAGGTGGTGGAAACGGTGATCGCCGGTAACTACGTAGAAATGGAGAGCGAAGGGAAGTCCAGAGACATCAAAAGCA GAGTCTCCAACTTCCTCTGGCACGGCGGCTCCGTTTACGACGCATGGTTCAGCTGCGCTTCTAATCAGGTGGCGCAAGTGCTGCTTACTTTGCCGTACTC GTTCTCCCAGCTGGGGATGCTGTCCGGGATACTATTCCAGCTATTCTACGGCGTGTTAGGGAGCTGGACGGCATACCTGATAAGTGTGCTGTACGTGGAG TACAGGACGAGGAAGGAAAGGGAGAAGGCTGATTTCAGGAACCATGTCATCCAATGGTTTGAAGTTCTTGATGGGCTGTTGGGGAAACACTGGAGGAACG TGGGTTTGGCTTTCAACTGCACGTTTCTCCTGTTTGGATCTGTCATTCAGCTCATAGCCTGTGCTAGTAACATATATTACATAAATGATAATCTGGACAA GAGGACTTGGACGTACATATTCGGAGCCTGCTGTGCTACAACTGTGTTTATTCCTTCATTCCACAACTACAGAATCTGGTCTTTCCTTGGTCTTGTTATG ACCACTTACACTGCTTGGTACCTCACTGTTGCTTCTCTCCTCCATGGCCAGGTGGAGGGAGTTCAACACTCGGGACCAACGAAGATGGTGCTGTATTTCA CAGGGGCCACAAACATTCTCTACACATTCGGAGGACATGCTGTTACTGTGGAGATAATGCATGCAATGTGGAAGCCACAGAAGTTCAAGTCCATATATCT ACTGGCTACGCTGTACGTTATGACGTTGACGCTCCCTTCCGCCGCTGCCGTTTACTGGGCATTCGGCGACGCTTTGCTTAACCATTCCAATGCCTTCTCC CTCCTCCCCAAATCTCCCTTCCGTGACATGGCCGTCATTCTTATGCTCATCCATCAGTTCATAACATTTGGGTTCGCATGCACGCCGCTTTACTTCGTGT GGGAGAAAGCCATAGGGCTTCACGAATGCAAGAGCCTTTGCAAGAGAGCGGCGGCAAGGCTGCCGGTGGTGATTCCGATCTGGTTCTTGGCGATTATCTT TCCTTTCTTCGGACCGATTAACTCCACCGTTGGATCATTGCTCGTTAGCTTCACTGTCTACATTATCCCTGCCTTGGCCCACATGTTCACCTTCAAATCT GCCGCTGCCCGTGAGAATGCGGTGGAGCAGCCACCAAAGTTGCTGGGGAGATGGGTGGGAGCGTACGTGATGAACATATTCGTGGTGGTGTGGGTACTGA TAGTAGGATTCGGGTTCGGAGGGTGGGCTAGTGTGACGAATTTCGTACACCAAATCGACACTTTCGGACTCTTCACCAAGTGCTACCAATGCCCACCGCC GGCAGGCGCCATTCCCGCTCACCTCAACGCCACCACCGGAGCTGCTCCTGCTCCTCTGTACAATCACCATAGCAACCACACCCACAACCTCTAG
AA sequence Show only first row Show all	>Lus10025057 pacid=23167878 polypeptide=Lus10025057 locus=Lus10025057.g ID=Lus10025057.BGIv1.0 annot-version=v1.0 MEAANGGDKVVETVIAGNYVEMESEGKSRDIKSRVSNFLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQLFYGVLGSWTAYLISVLYVE YRTRKEREKADFRNHVIQWFEVLDGLLGKHWRNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLVM TTYTAWYLTVASLLHGQVEGVQHSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVMTLTLPSAAAVYWAFGDALLNHSNAFS LLPKSPFRDMAVILMLIHQFITFGFACTPLYFVWEKAIGLHECKSLCKRAAARLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPALAHMFTFKS AAARENAVEQPPKLLGRWVGAYVMNIFVVVWVLIVGFGFGGWASVTNFVHQIDTFGLFTKCYQCPPPAGAIPAHLNATTGAAPAPLYNHHSNHTHNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Lus10025057 [exp]	0	1
AT3G56370			Leucine-rich repeat protein ki...		Lus10030526 [exp]	1.7	0.9137
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10041991 [exp]	3.0	0.8860
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10021711 [exp]	7.5	0.8230
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Lus10034488 [exp]	8.2	0.8485
AT1G73460			Protein kinase superfamily pro...		Lus10026360 [exp]	9.8	0.8719
AT3G22790			Kinase interacting (KIP1-like)...		Lus10006606 [exp]	14.0	0.8546
AT3G56370			Leucine-rich repeat protein ki...		Lus10025139 [exp]	14.6	0.8823
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022053 [exp]	16.7	0.8619
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10031090 [exp]	17.3	0.8395
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038007 [exp]	17.7	0.8551

Compare expression of checked genes

Lus10025057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.