Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G41830 645 / 0 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT4G38420 641 / 0 SKS9 SKU5 similar 9 (.1) AT1G21850 639 / 0 SKS8 SKU5 similar 8 (.1) AT1G76160 629 / 0 SKS5 SKU5 similar 5 (.1) AT1G21860 622 / 0 SKS7 SKU5 similar 7 (.1) AT4G22010 600 / 0 SKS4 SKU5 similar 4 (.1) AT4G28090 567 / 0 SKS10 SKU5 similar 10 (.1) AT5G66920 531 / 0 SKS17 SKU5 similar 17 (.1) AT1G55570 514 / 6e-179 SKS12 SKU5 similar 12 (.1) AT3G13400 509 / 1e-176 SKS13 SKU5 similar 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023977 [exp] 1019 / 0 AT5G63810 822 / 0.0 beta-galactosidase 10 (.1) Lus10022648 [exp] 823 / 0 AT1G21850 729 / 0.0 SKU5 similar 8 (.1) Lus10003346 [exp] 703 / 0 AT1G21860 627 / 0.0 SKU5 similar 7 (.1) Lus10034560 [exp] 622 / 0 AT1G76160 894 / 0.0 SKU5 similar 5 (.1) Lus10005649 [exp] 617 / 0 AT1G76160 889 / 0.0 SKU5 similar 5 (.1) Lus10021238 [exp] 598 / 0 AT1G76160 892 / 0.0 SKU5 similar 5 (.1) Lus10021832 [exp] 595 / 0 AT1G76160 865 / 0.0 SKU5 similar 5 (.1) Lus10015545 [exp] 584 / 0 AT4G22010 889 / 0.0 SKU5 similar 4 (.1) Lus10035282 [exp] 583 / 0 AT1G76160 798 / 0.0 SKU5 similar 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G180500 [exp] 677 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.005G247700 [exp] 634 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 628 / 0 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.002G227600 [exp] 591 / 0 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 591 / 0 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.004G010100 [exp] 583 / 0 AT4G22010 844 / 0.0 SKU5 similar 4 (.1) Potri.007G038300 [exp] 542 / 0 AT5G66920 822 / 0.0 SKU5 similar 17 (.1) Potri.007G038200 [exp] 496 / 8e-172 AT4G37160 771 / 0.0 SKU5 similar 15 (.1) Potri.001G000500 [exp] 495 / 2e-171 AT1G55570 853 / 0.0 SKU5 similar 12 (.1) Potri.003G224100 [exp] 490 / 2e-169 AT1G55570 855 / 0.0 SKU5 similar 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10025107 pacid=23167736 polypeptide=Lus10025107 locus=Lus10025107.g ID=Lus10025107.BGIv1.0 annot-version=v1.0 ATGGAAACCAGTCACCTCCTCATCATCTTCTCCCTCGTGCTCTGTTCTTTCACTGCATTCGTCAGCGCCGGAAACCCCGTCAGAAGCTTCGACTGGACTG TCACCTATGGCGATATCCAACCTCTCGGTGTTAAACAGCAGGGGATTCTGATCAATGGGAAATTCCCTGGTCCGGGTATCCAAGCCGTTACCAATGACAA TCTCATCATCAACGTCCACAACCACCTCAACGAGCCTTTCCTGATTTCTTGGAGTGGGATTCAGAACAGGAAGAATTCGTACGTGGACGGAGTGTTGGGG ACGACGTGTCCAATTCCGGCGGGGAAGAACTACACGTATAAGCTTCAGACGAAAGATCAGATTGGTACGTATTACTACTTCCCTTCCCTCGCATTCCACA AGGCTGCTGGTGGGTTTGGTGCCATCAATGTCCTCAGCCGTCCGATGATCCCCGTCCCGTTCGTTCCCCCTGCCGATGACTTCACTCTCCTCGTCGGAGA TTGGTATACGACTGACCACAAGGTTTTGAAGGCCAAGCTAGATAGGGGTCACAAACTTGGTCACCCTCATGGGATTTTGATCAATGGTCATGGCCCTCAT TCCCCTCCATCATTCACTTTCCGATCGGGTAAGACGTACAGGCTGAGGATTACGAATGTTGGGCTAGAAAACTCGATAAACTTCAGGATTCAGGGGCATA GTAACCTGAAGCTTGTAGAGGTGGAAGGAACTCACACCGTCCAGACAATGTACTCTTCGATAGATGTACATGTGGGACAGTCAATGTCGATTCTCGTAAC AGCTGACCAACCGGCTAAGGACTACAAAATCATCGTTTCGACTCGATTTTCAAACAAGGCCATATCATCCTCCGCGATCCTACACTATCAAGGAGCCAAC GGACTAGCCACTGGTCCGCTCCCCGTACCTCCGAACCAAATCAGTTGGTCCCTTCAACAAGCCCTTTCCATCAGGACGAATGTATCAGCGAGTGCAGCAA GGCCGAATCCACAGGGATCATACCACTACGGACAGGTGAACATTTCCAGGACTATAATCCTGAGAACCGCACCTGCTCAGGTTGAGAAGAAGCAGAGATA CGGGGTCAATGGGGTTTCGTTCGTTCACAGTGATACTCCATTGAAGCTCGCCGATCATTTCAACATCTCCGGAGTTTTCAAAGCTGGAAGCATCCCTTAC TCTCCCCCTGATCACCCCAGGAAGCTCCACCTGGATTCATCGGTGATGCTAGCCGATTACAGGTCTTTCGTTGAGATTGTGTTTCAGAATCGTGAGAAAA TCGTTCAGACTTGGCATATCAATGGCCATTCCTTCTGGGTAGTTGGGATGGATCTTGGAACATGGAAGCCAGAGAGCAGGAGAGGGTACAATCTAAACGA CGCCGTTTCGCGTTACACTGACCAGGGGCGAAGGCAGTACCTTGGGGAACAGTTCTATCTCAAAGTCTTCACCGATTCGAACTCGCGGAGGGATGAGTAC TTGATGCCGGAGCACTCTCTGCTCTGCGGGAAAGCTAAGGATATGAAGATTAAGCCTGTGGAATTTTGA
AA sequence Show only first row Show all	>Lus10025107 pacid=23167736 polypeptide=Lus10025107 locus=Lus10025107.g ID=Lus10025107.BGIv1.0 annot-version=v1.0 METSHLLIIFSLVLCSFTAFVSAGNPVRSFDWTVTYGDIQPLGVKQQGILINGKFPGPGIQAVTNDNLIINVHNHLNEPFLISWSGIQNRKNSYVDGVLG TTCPIPAGKNYTYKLQTKDQIGTYYYFPSLAFHKAAGGFGAINVLSRPMIPVPFVPPADDFTLLVGDWYTTDHKVLKAKLDRGHKLGHPHGILINGHGPH SPPSFTFRSGKTYRLRITNVGLENSINFRIQGHSNLKLVEVEGTHTVQTMYSSIDVHVGQSMSILVTADQPAKDYKIIVSTRFSNKAISSSAILHYQGAN GLATGPLPVPPNQISWSLQQALSIRTNVSASAARPNPQGSYHYGQVNISRTIILRTAPAQVEKKQRYGVNGVSFVHSDTPLKLADHFNISGVFKAGSIPY SPPDHPRKLHLDSSVMLADYRSFVEIVFQNREKIVQTWHINGHSFWVVGMDLGTWKPESRRGYNLNDAVSRYTDQGRRQYLGEQFYLKVFTDSNSRRDEY LMPEHSLLCGKAKDMKIKPVEF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G41830		SKS6	SKU5 SIMILAR 6, SKU5-similar 6...		Lus10025107 [exp]	0	1
AT4G38840			SAUR-like auxin-responsive pro...		Lus10029198 [exp]	2.8	0.8682
AT4G38840			SAUR-like auxin-responsive pro...		Lus10010714 [exp]	5.1	0.8664
AT5G62850		ATVEX1, SWEET5,...	VEGETATIVE CELL EXPRESSED1, No...		Lus10022226 [exp]	5.7	0.8353
AT5G18430			GDSL-like Lipase/Acylhydrolase...		Lus10004774 [exp]	8.1	0.8461
AT5G11420			Protein of unknown function, D...		Lus10013112 [exp]	10.2	0.8155
AT2G20760			Clathrin light chain protein (...		Lus10039815 [exp]	10.2	0.8501
AT5G50800		SWEET13, AtSWEE...	Nodulin MtN3 family protein (....		Lus10005935 [exp]	10.8	0.7624
AT3G23050	AUX_IAA	AXR2, IAA7	AUXIN RESISTANT 2, indole-3-ac...		Lus10002724 [exp]	12.2	0.8283
AT2G18730		ATDGK3	diacylglycerol kinase 3 (.1)		Lus10008906 [exp]	14.5	0.7692
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009623 [exp]	14.7	0.8546

Compare expression of checked genes

Lus10025107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.