Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47670 509 / 6e-177 Transmembrane amino acid transporter family protein (.1) AT4G35180 333 / 8e-109 LHT7 LYS/HIS transporter 7 (.1) AT5G40780 257 / 6e-80 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 255 / 3e-79 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G61270 247 / 8e-76 Transmembrane amino acid transporter family protein (.1) AT1G67640 244 / 9e-75 Transmembrane amino acid transporter family protein (.1) AT3G01760 240 / 3e-73 Transmembrane amino acid transporter family protein (.1) AT1G48640 234 / 4e-71 Transmembrane amino acid transporter family protein (.1) AT1G25530 222 / 1e-66 Transmembrane amino acid transporter family protein (.1) AT1G71680 192 / 3e-55 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023971 [exp] 984 / 0 AT1G47670 526 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10003338 [exp] 767 / 0 AT1G47670 565 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032751 [exp] 534 / 0 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10011668 [exp] 532 / 0 AT1G47670 918 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10015997 [exp] 443 / 2e-151 AT1G47670 450 / 2e-154 Transmembrane amino acid transporter family protein (.1) Lus10022641 [exp] 436 / 8e-151 AT1G47670 302 / 4e-99 Transmembrane amino acid transporter family protein (.1) Lus10022642 [exp] 391 / 3e-131 AT4G35180 431 / 7e-148 LYS/HIS transporter 7 (.1) Lus10003339 [exp] 389 / 3e-130 AT1G47670 410 / 9e-140 Transmembrane amino acid transporter family protein (.1) Lus10022329 [exp] 257 / 9e-80 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G181200 [exp] 644 / 0 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1) Potri.009G140800 [exp] 622 / 0 AT1G47670 509 / 6e-177 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 587 / 0 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 531 / 0 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181100 [exp] 464 / 1e-159 AT1G47670 384 / 2e-128 Transmembrane amino acid transporter family protein (.1) Potri.004G181000 [exp] 449 / 1e-154 AT1G47670 405 / 5e-138 Transmembrane amino acid transporter family protein (.1) Potri.001G335300 [exp] 251 / 1e-77 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 247 / 5e-76 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.010G055800 [exp] 243 / 2e-74 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335200 [exp] 234 / 6e-71 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10025113 pacid=23167853 polypeptide=Lus10025113 locus=Lus10025113.g ID=Lus10025113.BGIv1.0 annot-version=v1.0 ATGGGTGATCATGATCGAAGCCACCGGTACGATTCCTACTCCCTGGACCAAACTCTAGCACCGGGCACGTCCAACCCGACGACCCCACGGCCTCCGATAT CCGCGCCGCCCTCGCAGTTCCACTCTCCGTCACTCTCCCGGTCGCCGCTCCTCGTCCTCAGCCCGGACCGCGTAGTGACAGCTCCTGCAAGCAAGTGTGC GACTCCGCGAGCTTCGAGGACTCCTGGAGGGTTTCGAACGCCCCGGTTCATCACGCCACTGGGTAGCCCCATCAGGAAGGCGCTGCATCTCACCAAGCTC GACCCTAACGATGCATGGCTCCCCATCACCGAGTCGAGAAACGGGAACGCCCTGTACGCTGCGTTTCACTGCCTTTGCTCCGGGATCGGGATCCAGGCCC TCGTCCTCCCCGTCGCGTTTACCGTCCTTGGATGGGCATGGGGGATCATATGTTTGACACTAGCATTCATGTGGCAGCTCTACACTCTCTACATCCTCGT CCAACTCCACGAATCCGTCGAAACCGGCGTCCGTTACAGCCGGTACCTCCAGCTCGCCAGCGCAGCTTTCGGCGAGAAGTTGTCGAAAGCCTTGGCGTTG TTCCCCGTAATATTCCTATCGGCAGGCACGTGCATGGCACTGATCATCATTGGTGGGTCCACGTCAAAACTTCTCTTCCAGACCATCTGTGGGCCCACCT GCTCGTCCGGCAGCGAGGCTCCGACCACTGTGGAATGGTACTTGATCTTCACGATCGCGGCTGCGCTCCTCGCGCAGCTCCCGACCCTCAACTCCATAGC CGGAGTCTCGCTGGTCGGAGCCATCACGGCCGTCGGTTACTGTACCGTTATATGGCTCGTCTCTGTCGCGGAGGGTCGGGTTCCAGGGGTTTCATATAAC CCGGTTCGAGCCAGGTCGGATCTCCAGACGGCGTTTAGTGTGTTGAATTCAATTGGAATCATTGCTTTCGCTTTCAGGGGTCACAATCTCGTTCTCGAGA TCCAGGCAACGATGCCTTCGAGCGAAAAACATCCGTCGACTGTACCAATGTGGAAAGGTGTCAAGTTTGCATATGCCTTCATTGCTATGTGCCTCTTTCC TCTAGCAATAGGAGGCTATTGGGCATATGGCCAACTGATTCCATCAGGTGGGATGCTGACGGCGCTATTCGTATACCACGGTCAAACCACGTCGAGGTTC ATCCTAGGGCTAACCAGCTTCTTCGTAGTGATCAACGCAGTGAGCTCATTCCAGCTCTACGGGATGCAAGTATTCGACCTCCTCGAGTCGCTGGTGGTGA CCAAGCTGAAAAGGGCGTGCCCGCCCTGGGTCAGGGGTTCGATACGAGCAGTGTTCGCGTTCACTTGCTTCTTCTTCGCGGTGGCACTACCTTCCCTAGG AAGCGTGGCGGGGCTGATCGGAGGGATCACACTCCCCGTTACGGTGGCGTACCCGTGCTTTATGTGGCTGAAGGTGAGGAAGCCGGCGAAGTACAGTGGG ATGTGGGTTTTGAATTGGGGGCTTGGAGTGTTCGGGATAGGTTTGAGTGGAGCTTTGGTCGCCGCCGGGGTTTATGTTGTGATTGAGACTGGGATCGATA ACCTCAGCTTCTTCAAGCCCTCTTGA
AA sequence Show only first row Show all	>Lus10025113 pacid=23167853 polypeptide=Lus10025113 locus=Lus10025113.g ID=Lus10025113.BGIv1.0 annot-version=v1.0 MGDHDRSHRYDSYSLDQTLAPGTSNPTTPRPPISAPPSQFHSPSLSRSPLLVLSPDRVVTAPASKCATPRASRTPGGFRTPRFITPLGSPIRKALHLTKL DPNDAWLPITESRNGNALYAAFHCLCSGIGIQALVLPVAFTVLGWAWGIICLTLAFMWQLYTLYILVQLHESVETGVRYSRYLQLASAAFGEKLSKALAL FPVIFLSAGTCMALIIIGGSTSKLLFQTICGPTCSSGSEAPTTVEWYLIFTIAAALLAQLPTLNSIAGVSLVGAITAVGYCTVIWLVSVAEGRVPGVSYN PVRARSDLQTAFSVLNSIGIIAFAFRGHNLVLEIQATMPSSEKHPSTVPMWKGVKFAYAFIAMCLFPLAIGGYWAYGQLIPSGGMLTALFVYHGQTTSRF ILGLTSFFVVINAVSSFQLYGMQVFDLLESLVVTKLKRACPPWVRGSIRAVFAFTCFFFAVALPSLGSVAGLIGGITLPVTVAYPCFMWLKVRKPAKYSG MWVLNWGLGVFGIGLSGALVAAGVYVVIETGIDNLSFFKPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47670			Transmembrane amino acid trans...		Lus10025113 [exp]	0	1
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10026372 [exp]	1.0	0.8449
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10031674 [exp]	4.5	0.8433
AT1G47670			Transmembrane amino acid trans...		Lus10023971 [exp]	9.5	0.7986
					Lus10004451 [exp]	9.8	0.7971
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10004443 [exp]	12.0	0.8326
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10016177 [exp]	17.9	0.7999
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10013194 [exp]	23.1	0.7659
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10012767 [exp]	24.8	0.8415
					Lus10007169 [exp]	25.4	0.7581
AT3G29250		AtSDR4	short-chain dehydrogenase redu...		Lus10022562 [exp]	33.3	0.8272

Compare expression of checked genes

Lus10025113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.