Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33610 410 / 3e-137 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) AT1G21700 157 / 3e-40 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1) AT2G47620 147 / 8e-38 CHB1, ATSWI3A SWITCH/sucrose nonfermenting 3A (.1) AT4G34430 107 / 9e-24 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) AT3G07740 50 / 3e-06 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016043 [exp] 771 / 0 AT2G33610 429 / 4e-147 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10016045 [exp] 208 / 2e-60 AT1G76510 374 / 1e-126 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Lus10032555 [exp] 157 / 7e-41 AT2G47620 371 / 3e-123 SWITCH/sucrose nonfermenting 3A (.1) Lus10043188 [exp] 156 / 2e-40 AT2G47620 382 / 4e-127 SWITCH/sucrose nonfermenting 3A (.1) Lus10040472 [exp] 145 / 9e-36 AT4G34430 694 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10023583 [exp] 144 / 2e-35 AT4G34430 704 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10026334 [exp] 137 / 2e-33 AT1G21700 556 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10029695 [exp] 137 / 2e-33 AT1G21700 666 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042329 [exp] 132 / 1e-31 AT4G34430 652 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G004800 [exp] 461 / 1e-156 AT2G33610 435 / 3e-149 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Potri.015G100400 [exp] 163 / 9e-43 AT2G47620 395 / 7e-132 SWITCH/sucrose nonfermenting 3A (.1) Potri.002G080600 [exp] 151 / 4e-38 AT1G21700 679 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.005G180800 [exp] 147 / 8e-37 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.009G114900 [exp] 139 / 3e-34 AT4G34430 727 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.004G153300 [exp] 134 / 2e-32 AT4G34430 711 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.002G003700 [exp] 49 / 8e-06 AT1G76510 451 / 5e-157 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Potri.006G017300 [exp] 45 / 0.0001 AT4G16420 640 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.016G007600 [exp] 44 / 0.0005 AT4G16420 602 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04433 [flax] [poplar] SWIRM SWIRM domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10025165 pacid=23167760 polypeptide=Lus10025165 locus=Lus10025165.g ID=Lus10025165.BGIv1.0 annot-version=v1.0 ATGGTGCCCGTTCAAGATGTTACTGAAAATGATGCTGATGTCGACCTTCTTGAGGAATCTACCGGCCTAGGTCAAAATGATCAAATACATTTGCATTCTG AAAATGCTGCCGTCGGCGTTGTTGTGATGAGTGATCAACATCATAACTGTATCTTGACCGGCGGTGACAGTCCCCCCACCAGTGCTCCAGCTACTCGACA CACTACTCCTCAACCGGATGCAACGGCTGATATGAATTGCGATAGAGAATATGTTACAGGTCTTCAATCCAAGTCAATAACCGCCACTCCTCGACCTCTC AGAAAGTACAATAGTTCTATATCGAAGCATGGAGGTTCTTCCAAAGCCAAGAGTGCCTGGACTGACCTCGAGACGGGAGATGTTGAAGAGGCAGGGAACC CAGAGGAAAGGGAGACATTCGTGAGAGAGCTGGAAGATTTTCACAGGGACAATGCCCATCCTTCCATGCCTGCTCCAGAGCCAACCCCCCCTCTCCCGGC CACCGTTACCTTGCCGTCCACCAAACCAACTCCCCTCCTCCCCCCTCCCCCCTCCGCCGTTGCCGAAGCTTCCGCAACTTCTTCCTTTCCAGTTACTCCC TCCGTCGCCGCCGCCCCCTCCGATGCCGATTTGGTCCACATCCCTAGCTACTCCCGCTGGTTCTCCTGGGATGACATTCACGAATGCGAGGTTCGATTTC TCCCGGAGTTCTTCGATTCTCGCTCCCCTTCCAATACTCCTAAGCACTACCTCTACCTCAGAAACTCCATCGTCAAGCAGTTCAGGCGGAATCCTTCCTC TAAGATCACCTACACCGACGTCCGCACGACTCTCACTCTCGTCTCGGACGTCGGCTCAGTCCGCCGAGTCTTCGATTTCTTGGACGCATGGGGGCTCATC AATTACTCTCCTCCTCCTTCTTTAGCCAAGCCTTTGAAGTGGGAAGACAACAAGGATGTCAAGGCCTCCGGCGCTACAGATCCCCGAGCAATGGCTTCCA CCTCTGACGCATCTCCTCTCGTCAAGGAAACTTCCAAACAACGGCAATGTAGTGCATGCAAGTCCCCTTGCAACATCGCTTGCTTTACTTGCGACAAGTA CGACATTACTGTTTGTGCGCGGTGCTATGTGCGAGGCAATTACAGGGTGGGAGTTACCAACTCTGATTTCAGGCGAGTTGAGATCAGCGAAGAGTCGAAT GCTGATTGGACAGATAAAGAGACGCTGCAGCTACTGGAAGCGGTCACGCACTACGGTGACGACTGGAAGAAGATTGCACAGCATGTCTCTGGTAGAAGTG AGAAGGATTGCATCACCCATTTCATCAAGCTTCCTATGGGGGAACAGCTTGCTTGCTCTGCAGATACGGGAGGGGTTGGAAATAAGCAGAGCCAACCGGA AGATGATGATAACAATGCTGGATCCGGTGTTGAACATAGTAGCCCTAGTAAAAGGTTGTGCCTTTCTCCTCTTGCAGATGCTAGCAACCCAATCATGGCT CAGGCTGCCTTTTTATCTGCTTTGGCTGGTTCGAGGGTCGCTGAAGCTGCTGCTCAAGCAGCTTTAGCTGCAGTGTCCAAGGCGGGACAAGGAGAATCTA AGACGAACATTAGAATTATTTATAAAGGAACCCAAGGCATCTTGAAATCCTCGGAAGAGGGTGATTCAGATGTAAAGCCAATGCAGAAGGAGAAGGTGAA TGTGGGTGAAGAATTCTGCAGAATTGCGGAGGTGCAGATGAAGGGGATGATAGAGAAGATGATAGGGTTCGAGGAAATGGATATGCAGATGGAAAAAGAG TGGAAACAGATGGAGCAAGTGAGGGACATGTTGTTCTTTGACCAGTTGAACTACTTGCGGCCAAAAACGTCAAGTCGGAGAAGCGGAGGAGGAGAAGAAG AAGAAGAAGAAGAGCAAGCACAGGCTGGCACAAGGGTGGGAGAGCATTATAATAATGATACACACCACCACGACTAA
AA sequence Show only first row Show all	>Lus10025165 pacid=23167760 polypeptide=Lus10025165 locus=Lus10025165.g ID=Lus10025165.BGIv1.0 annot-version=v1.0 MVPVQDVTENDADVDLLEESTGLGQNDQIHLHSENAAVGVVVMSDQHHNCILTGGDSPPTSAPATRHTTPQPDATADMNCDREYVTGLQSKSITATPRPL RKYNSSISKHGGSSKAKSAWTDLETGDVEEAGNPEERETFVRELEDFHRDNAHPSMPAPEPTPPLPATVTLPSTKPTPLLPPPPSAVAEASATSSFPVTP SVAAAPSDADLVHIPSYSRWFSWDDIHECEVRFLPEFFDSRSPSNTPKHYLYLRNSIVKQFRRNPSSKITYTDVRTTLTLVSDVGSVRRVFDFLDAWGLI NYSPPPSLAKPLKWEDNKDVKASGATDPRAMASTSDASPLVKETSKQRQCSACKSPCNIACFTCDKYDITVCARCYVRGNYRVGVTNSDFRRVEISEESN ADWTDKETLQLLEAVTHYGDDWKKIAQHVSGRSEKDCITHFIKLPMGEQLACSADTGGVGNKQSQPEDDDNNAGSGVEHSSPSKRLCLSPLADASNPIMA QAAFLSALAGSRVAEAAAQAALAAVSKAGQGESKTNIRIIYKGTQGILKSSEEGDSDVKPMQKEKVNVGEEFCRIAEVQMKGMIEKMIGFEEMDMQMEKE WKQMEQVRDMLFFDQLNYLRPKTSSRRSGGGEEEEEEEQAQAGTRVGEHYNNDTHHHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Lus10025165 [exp]	0	1
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10024392 [exp]	2.0	0.8803
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10014717 [exp]	2.8	0.8795
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10025355 [exp]	3.5	0.8734
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10034489 [exp]	4.0	0.8601
AT5G27990			Pre-rRNA-processing protein TS...		Lus10006795 [exp]	5.7	0.8451
AT1G53520			Chalcone-flavanone isomerase f...		Lus10026174 [exp]	8.4	0.8588
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10036045 [exp]	10.7	0.8581
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10037858 [exp]	13.2	0.8487
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014327 [exp]	15.4	0.8228
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10017507 [exp]	15.5	0.8115

Compare expression of checked genes

Lus10025165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.