Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37650 431 / 1e-147 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) AT3G49950 144 / 1e-38 GRAS GRAS family transcription factor (.1) AT2G04890 142 / 5e-38 GRAS SCL21 SCARECROW-like 21 (.1) AT1G66350 139 / 5e-36 GRAS RGL1 RGA-like 1 (.1) AT1G50600 138 / 2e-35 GRAS SCL5 scarecrow-like 5 (.1) AT3G03450 137 / 2e-35 GRAS RGL2 RGA-like 2 (.1) AT5G48150 132 / 1e-33 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G21450 131 / 4e-33 GRAS SCL1 SCARECROW-like 1 (.1) AT2G01570 129 / 3e-32 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G17490 122 / 6e-30 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012089 [exp] 668 / 0 AT4G37650 483 / 2e-167 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10019281 [exp] 498 / 4e-174 AT4G37650 509 / 2e-177 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10011542 [exp] 498 / 3e-173 AT4G37650 499 / 3e-172 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10019361 [exp] 348 / 2e-115 AT4G37650 403 / 5e-136 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10039709 [exp] 143 / 1e-37 AT3G49950 350 / 3e-117 GRAS family transcription factor (.1) Lus10012554 [exp] 141 / 4e-36 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10041540 [exp] 140 / 5e-36 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10018498 [exp] 138 / 8e-36 AT3G49950 347 / 3e-116 GRAS family transcription factor (.1) Lus10012323 [exp] 137 / 4e-35 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G063300 [exp] 469 / 8e-163 AT4G37650 576 / 0.0 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.017G019900 [exp] 385 / 4e-131 AT4G37650 405 / 1e-137 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G132000 [exp] 373 / 1e-126 AT4G37650 410 / 4e-140 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.017G041500 [exp] 154 / 6e-42 AT3G49950 370 / 2e-125 GRAS family transcription factor (.1) Potri.007G119000 [exp] 153 / 1e-41 AT3G49950 369 / 7e-125 GRAS family transcription factor (.1) Potri.005G186500 [exp] 145 / 6e-38 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 144 / 2e-37 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.014G164400 [exp] 138 / 1e-35 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 137 / 2e-35 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.008G131700 [exp] 134 / 5e-34 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10025200 pacid=23167754 polypeptide=Lus10025200 locus=Lus10025200.g ID=Lus10025200.BGIv1.0 annot-version=v1.0 ATGGATCATCATCATCATCATCAACCTCAAGACGACTATAACAAATCTTCCTCCAAACACCCAACCCCAACCACCGTTTCCACCCCATCCCAACTTTTCA CCGTCGTTAACCCGGCCCCACTACCTCTACACCTAGACTTCTCCAAGCCATGGGCATCCCACCTCCTCCTCCAAGCCGCCAAAGCCATCGCCGACCAGAA CACCCACCTTCTCCACAAACTCATATGGACCCTCAACGACCTCGCCTCTCCCTACGGTGATACCCAACAGAAGCTTGCTTCTTACTTTCTCCAAGCCATC TTCAGCCGCCTCGCCAACTCTGCACGCCGTTCCCTCCTCACGCTTTCCTCAGCCGCCGATCGCATCTCATCCTTTGACTCCACCCGGAAGCTCCTCCTCA AATTCCAGGAAGTTTGCCCCTGGACAACCTTCGGCCACGTGTCCTCCAATGGTGCCATCCTCGAATCCCTAGGCGCTCACCCCAAACTCCACGTCCTTGA TTTCAGCAACACCTTTTGCACCCAGTGGCCCACCTTCCTCGAATCCCTCGCCACCCGCTACGACGACACCCCTCACCTACGCCTCACAACCGTCGTCGCC GGAGGCGGCTGGGCGAGAATGGGGGCGGGCGTCGCCGGCGGCGGTGGAGGTGAGAGGGTGATGAACGAGATCTCTGCCCGGATGGAGAAATTCGCCCGGC TGATGGGGGTTCCGTTCAAATTCGACATCATTCACCACTCTGGCGACCTCTCTGAACTCAATTTCGACGGATTGGGGATTCAGGATGACGAAGCCCTGGC GATTAATTGCATCGGCTCGCTTCGATCCGTCTCGAGGAAAAGGCGGGATTACGTGTTCTCGAGGTTTAGGCAATTGCGACCGAGGATTGTGACGGTGGTG GAGGAGGAGGCGGATCTGGACGACAACGGCGCAGGTTTTGTAAGAGGGTTTGAGGAGTGCTTGCGATGGTTTAGTGTTTATTTTGAGTGCTTGGATGAGA GCTTTCTGAAGACGAGCAACGAGAGATTGATGCTAGAGAGAAGAGCTGGGAGGGGGATTTTGGATCTTGTAGCGTGCTCGCCGGAGGTATCGACGGAGAG AAGGGAGACGGCAGAGCGGTGGTCAGCGCGGTTGAGCGGTAGCGGATTCGTTGGGGTGGGATTTAGCGAGGAGGTTAGTGATGATGTGAAGGCGTTGTTG AGGCGATATAAGGAAGGATGGTCAATGAGGCAGTTTGGTGGCAGAGGAGACGGCGGCGGAATGTTCTTGTGCTGGAAGGATCAGCCGGTGGTTTGGGTGA GTGCATGGAGGCCTATTGAAGACTGA
AA sequence Show only first row Show all	>Lus10025200 pacid=23167754 polypeptide=Lus10025200 locus=Lus10025200.g ID=Lus10025200.BGIv1.0 annot-version=v1.0 MDHHHHHQPQDDYNKSSSKHPTPTTVSTPSQLFTVVNPAPLPLHLDFSKPWASHLLLQAAKAIADQNTHLLHKLIWTLNDLASPYGDTQQKLASYFLQAI FSRLANSARRSLLTLSSAADRISSFDSTRKLLLKFQEVCPWTTFGHVSSNGAILESLGAHPKLHVLDFSNTFCTQWPTFLESLATRYDDTPHLRLTTVVA GGGWARMGAGVAGGGGGERVMNEISARMEKFARLMGVPFKFDIIHHSGDLSELNFDGLGIQDDEALAINCIGSLRSVSRKRRDYVFSRFRQLRPRIVTVV EEEADLDDNGAGFVRGFEECLRWFSVYFECLDESFLKTSNERLMLERRAGRGILDLVACSPEVSTERRETAERWSARLSGSGFVGVGFSEEVSDDVKALL RRYKEGWSMRQFGGRGDGGGMFLCWKDQPVVWVSAWRPIED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10025200 [exp]	0	1
					Lus10018215 [exp]	1.7	0.9130
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10016444 [exp]	4.9	0.8923
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10007702 [exp]	5.1	0.9013
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10035189 [exp]	6.6	0.8219
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	7.4	0.8921
AT5G51160			Ankyrin repeat family protein ...		Lus10034256 [exp]	7.9	0.8955
AT2G32210			unknown protein		Lus10031204 [exp]	7.9	0.8737
AT2G02240		MEE66	maternal effect embryo arrest ...		Lus10018171 [exp]	8.1	0.8658
AT3G11010		AtRLP34	receptor like protein 34 (.1)		Lus10011039 [exp]	10.1	0.8824
AT4G12970		EPFL9, STOMAGEN	stomagen (.1)		Lus10020408 [exp]	10.7	0.8559

Compare expression of checked genes

Lus10025200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.