Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49950 146 / 4e-42 MYB ATTRB1, TRB1 telomere repeat binding factor 1 (.1.2.3) AT5G67580 146 / 4e-42 MYB ATTBP3, TRB2, ATTRB2 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT3G49850 144 / 3e-41 MYB TBP2, TRB3, ATTRB3 TELOMERE-BINDING PROTEIN 2, telomere repeat binding factor 3 (.1) AT1G17520 79 / 8e-17 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1) AT1G72740 77 / 2e-16 MYB Homeodomain-like/winged-helix DNA-binding family protein (.1.2) AT1G17460 43 / 0.0002 MYB TRFL3 TRF-like 3 (.1.2) AT1G15720 42 / 0.0002 MYB TRFL5 TRF-like 5 (.1) AT1G72650 42 / 0.0003 MYB TRFL6 TRF-like 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012092 [exp] 335 / 1e-116 AT1G49950 182 / 3e-56 telomere repeat binding factor 1 (.1.2.3) Lus10011546 [exp] 209 / 2e-66 AT5G67580 199 / 2e-62 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10019260 [exp] 204 / 2e-64 AT5G67580 201 / 5e-63 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10033775 [exp] 104 / 5e-25 AT5G15340 635 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014653 [exp] 103 / 1e-24 AT5G15340 634 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040111 [exp] 94 / 3e-22 AT1G72740 135 / 6e-38 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10030935 [exp] 93 / 1e-21 AT1G72740 171 / 5e-51 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10027621 [exp] 91 / 2e-21 AT1G72740 107 / 1e-27 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Lus10024200 [exp] 54 / 6e-08 AT1G15720 65 / 5e-11 TRF-like 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G004900 [exp] 209 / 1e-66 AT5G67580 224 / 6e-72 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.007G005000 [exp] 197 / 2e-61 AT5G67580 212 / 1e-66 TELOMERE-BINDING PROTEIN 3, TELOMERE REPEAT BINDING FACTOR 2, Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.001G292700 [exp] 156 / 4e-46 AT1G49950 273 / 2e-91 telomere repeat binding factor 1 (.1.2.3) Potri.009G087000 [exp] 146 / 2e-42 AT1G49950 277 / 5e-93 telomere repeat binding factor 1 (.1.2.3) Potri.018G066300 [exp] 104 / 3e-26 AT1G72740 186 / 6e-58 Homeodomain-like/winged-helix DNA-binding family protein (.1.2) Potri.006G147400 [exp] 98 / 3e-24 AT1G17520 209 / 2e-66 Homeodomain-like/winged-helix DNA-binding family protein (.1) Potri.013G154500 [exp] 49 / 3e-06 AT5G58340 88 / 4e-18 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G054401 [exp] 41 / 0.0007 AT1G68030 104 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00538 [flax] [poplar] Linker_histone linker histone H1 and H5 family CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10025203 pacid=23167850 polypeptide=Lus10025203 locus=Lus10025203.g ID=Lus10025203.BGIv1.0 annot-version=v1.0 ATGCGTGGTCCTAAGCAGAGGTGGACGGCAGAAGAGGAGGCGGCTCTTAAAGGTGGAATTCTTAAGCATGGCACTGGTAAATGGCGCGCAATACTTATGG ACCCCGACTTCGGTCCAGTCTTGCGCATCCGCTCCAATGTTGATCTCAAAGATAAATGGAGAAACATTAAGGTGATGGCCATTTGGGGTTCTAGGCATAA GGCAAAGCTTGCACTTAACACAACTCCACATAACCCTGAACTTGAGCAGAGTTTGAAGGACCTACTTCCAAAGTTGGATAGTTTGATAGTAGAAGCTATT TCCACTTTGAAGGAGCCAGAGGGTTCTGACGAAGCTTCAATTGCTACGTACATAGAGCTTCTATGTCATGACAGGGGAGTGCCAAATCTCAGAAAGCTAT TGGCAAGAAAACTAAAGCTTTTAATAGCCACTGGAAAGTTAATCAAGGTAAAACAACAGTACAGAATTGCACCAAGCTCTACAGTATCCAAGGGAACAAA TGAGAGTCCCCTTCTAGTTGTAGATGGAAAGCAGAAGAACACATCAAATGTAGATAAGAATAGCAGCAAAATACAGAGTATGTCTCATGTTGAGCAAGAA TTACATAGAATACAAGGTATGACTGCAGAAGAAGCAGCTGCTGTCGCAGTTAAGGCAATTGCAGAAGCAGAGTTTGCAATTGCGGAGGCTGAAGAGGCTG CCAGGAAGGCTGAGAGAGCAGAGGCCGAAGCAGAAGCATGCCATGTCTTTGCAGAAGCTGCTGTTCAAGCATTTAGATACCAGACATGTCATTACTGGTC TTTTCTTTAG
AA sequence Show only first row Show all	>Lus10025203 pacid=23167850 polypeptide=Lus10025203 locus=Lus10025203.g ID=Lus10025203.BGIv1.0 annot-version=v1.0 MRGPKQRWTAEEEAALKGGILKHGTGKWRAILMDPDFGPVLRIRSNVDLKDKWRNIKVMAIWGSRHKAKLALNTTPHNPELEQSLKDLLPKLDSLIVEAI STLKEPEGSDEASIATYIELLCHDRGVPNLRKLLARKLKLLIATGKLIKVKQQYRIAPSSTVSKGTNESPLLVVDGKQKNTSNVDKNSSKIQSMSHVEQE LHRIQGMTAEEAAAVAVKAIAEAEFAIAEAEEAARKAERAEAEAEACHVFAEAAVQAFRYQTCHYWSFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10025203 [exp]	0	1
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10019188 [exp]	1.4	0.8945
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10012482 [exp]	4.5	0.8605
AT2G45530			RING/U-box superfamily protein...		Lus10000211 [exp]	4.6	0.8469
AT1G13750			Purple acid phosphatases super...		Lus10036902 [exp]	5.1	0.8780
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10037374 [exp]	5.3	0.8090
AT5G10530			Concanavalin A-like lectin pro...		Lus10033779 [exp]	8.0	0.8448
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10012483 [exp]	8.5	0.8234
AT4G13530			unknown protein		Lus10003531 [exp]	8.9	0.8518
AT1G14740			Protein of unknown function (D...		Lus10013248 [exp]	9.2	0.8301
AT2G17787			unknown protein		Lus10013567 [exp]	9.2	0.8777

Compare expression of checked genes

Lus10025203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.