Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10960 732 / 0 ATAZG1 AZA-guanine resistant1 (.1) AT5G50300 468 / 2e-159 ATAZG2 ARABIDOPSIS THALIANA AZA-GUANINE RESISTANT2, Xanthine/uracil permease family protein (.1) AT4G35050 57 / 3e-08 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G16780 55 / 1e-07 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 44 / 0.0003 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009102 [exp] 1039 / 0 AT3G10960 780 / 0.0 AZA-guanine resistant1 (.1) Lus10030548 [exp] 709 / 0 AT3G10960 881 / 0.0 AZA-guanine resistant1 (.1) Lus10012895 [exp] 696 / 0 AT3G10960 873 / 0.0 AZA-guanine resistant1 (.1) Lus10040894 [exp] 463 / 1e-157 AT5G50300 691 / 0.0 ARABIDOPSIS THALIANA AZA-GUANINE RESISTANT2, Xanthine/uracil permease family protein (.1) Lus10005074 [exp] 81 / 7e-16 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 80 / 1e-15 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10034287 [exp] 61 / 1e-11 AT5G50300 91 / 1e-22 ARABIDOPSIS THALIANA AZA-GUANINE RESISTANT2, Xanthine/uracil permease family protein (.1) Lus10020917 [exp] 44 / 0.0003 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033460 [exp] 43 / 0.0006 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G083300 [exp] 738 / 0 AT3G10960 903 / 0.0 AZA-guanine resistant1 (.1) Potri.016G133800 [exp] 733 / 0 AT3G10960 847 / 0.0 AZA-guanine resistant1 (.1) Potri.015G090000 [exp] 505 / 9e-174 AT5G50300 736 / 0.0 ARABIDOPSIS THALIANA AZA-GUANINE RESISTANT2, Xanthine/uracil permease family protein (.1) Potri.009G135100 [exp] 73 / 2e-13 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G175300 [exp] 69 / 5e-12 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.014G179700 [exp] 44 / 0.0002 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G216200 [exp] 44 / 0.0003 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00860 [flax] [poplar] Xan_ur_permease Permease family CL0062 [flax] [poplar] PF12265 [flax] [poplar] CAF1C_H4-bd Histone-binding protein RBBP4 or subunit C of CAF1 complex
Representative CDS sequence Show only first row Show all	>Lus10025246 pacid=23157403 polypeptide=Lus10025246 locus=Lus10025246.g ID=Lus10025246.BGIv1.0 annot-version=v1.0 ATGGTGACGGAAAACGCAGCCACTCAGGAGGCTCACATCTCAATCCTGGCAAAGCTCAACGCCTACGTGGCAACAAGCAGAGTCGGGAAACGATTCAAAC TCGTCGAGCGGAACACCTCCTTCACCACCGAGCTCCGAGCCGGCACCGCCACGTTCCTAACCATGGCGTATATCCTCGCCGTCAACGCCAGCATCCTCGC CGACTCCGGCGGCACCTGCACAATCGCCGACTGCATACCTCCCGGCTCCGACCATGACCACTCCTGTAAATTCACCCACGTAGTCAACCCTGGCTACCTC GATTGCGTTGAACAGACCCGTAAGGATCTAATAGTCGCCACGATTGTGTCTTCTTTAGTTGGCTGCTTTATAATGGGAATGTTCGCGAATCTTCCTCTGG CTCTGGCTCCAGGAATGGGCACCAACGCCTATTTCGCCTACACGGTGGTCGGATACCACGGATCCGGCTACCTATCCTACGAACACGCCCTCACCGCAGT CTTCATCGAGGGTTTGATCTTCCTCTTCTTTTCCACGTTCGGTTTACGCGCCAGGTTGGCGAAATTCGTCCCCAAACCGGTTCGGGTCAGCTGCTCCGCC GGAATCGGGTTGTTCCTCGCGTTCGTCGGGTTACAGAGCAACCAAGGAATCGGTTTAGTTGGGTACAGCTCATCAACATTGGTCACCATCGGTGCGTGCC CGAGATCCTCGCAAGTCGCGTTAGCTCCCGTTAAGATTATTAACGGCACCGTTACTCTAATCCCTAACGGAATCGTCTCCGACGAGTTCCTCTGCGAGAG TGGACGGATGGAGAGCCCCACGTTATGGCTTGGAATTGTTGGATTCGTCATAATCGCTTACTGTTTAGTCAAGAACATCAAAGGAGCTCTGATCTACGGC GTTGTTTTGGTCACCATCTTGTCCTGGTTCCGTAACACTCCGATCACGGCGTTCCCGAATACAGAGGCCGGTAAGCAAGAGTACGAGTACTTCAAGACGG TGGTCGACATTCACGCGATTCAACGAACCGCCGGAGTGTTGGAATTTAACGGAATGGGGACGGCGAACTTCTGGCAAGCTTTAGCCACTTTTTTATACGT TGACATTTTGGACACGACGGGGACGCTCTATTCGATGGCGGAGTTCGCGAAACTAACAGACGCTAACGGAGATTTCGAAGGTCAGTACTTTGCGTTTATG TCTGACGCGGCTTCGATCGTGGTGGGGTCATTATTGGGGACGTCATCGGTGACGACGTTTGTGGAATCGTCGACGGGAATACGGGAAGGTGGACGGACGG GACTGACGGCGTTAACGGTGGCGGGGTATTTTTTCTTGGCGTTCTTCTTCACGCCGTTACTGGCGTCGATCCCTGCGTGGGCGGTGGGTCCGCCGTTGAT ATTGGTCGGGGTTTTGATGATGAGGCCGGTGATGGAAATCGAGTGGGACAACATGAAACAGGCGATCCCGGCGTTTGTGACGATGATATTAATGCCGCTA ACGTATTCGATAGCGTATGGTTTGTTGGGTGGGATCGGGACGTTTGTTATTTTACATGTATGGGACTGGGGTGTTGCGGTTTGGTTGAAGTTAACGAAGC TGTTTGGGCTGATTGTCGGAGGAAAGAATTCGGCGAAGGAGGAAACAGCGGTCGATGGGAAGCCGGCCGGTGGCCGGCAGAATGTAATCTCCCACCCACT TGAATGGCCGTCTCGCACCGCTCACTGGGTTCCACTCGAGGCTCCGCCGCCTTACGCCGCCGACCCGCCCTCCTTCCCCGTCCACATGCTTGTCCTCGGA ACCCACACCTCCTACGATTTACGCAACTATCTCCGGATCGCCGATGCCCTCTTGCCGACCTGCGACGTCGAAGTTAAAATCGACTGA
AA sequence Show only first row Show all	>Lus10025246 pacid=23157403 polypeptide=Lus10025246 locus=Lus10025246.g ID=Lus10025246.BGIv1.0 annot-version=v1.0 MVTENAATQEAHISILAKLNAYVATSRVGKRFKLVERNTSFTTELRAGTATFLTMAYILAVNASILADSGGTCTIADCIPPGSDHDHSCKFTHVVNPGYL DCVEQTRKDLIVATIVSSLVGCFIMGMFANLPLALAPGMGTNAYFAYTVVGYHGSGYLSYEHALTAVFIEGLIFLFFSTFGLRARLAKFVPKPVRVSCSA GIGLFLAFVGLQSNQGIGLVGYSSSTLVTIGACPRSSQVALAPVKIINGTVTLIPNGIVSDEFLCESGRMESPTLWLGIVGFVIIAYCLVKNIKGALIYG VVLVTILSWFRNTPITAFPNTEAGKQEYEYFKTVVDIHAIQRTAGVLEFNGMGTANFWQALATFLYVDILDTTGTLYSMAEFAKLTDANGDFEGQYFAFM SDAASIVVGSLLGTSSVTTFVESSTGIREGGRTGLTALTVAGYFFLAFFFTPLLASIPAWAVGPPLILVGVLMMRPVMEIEWDNMKQAIPAFVTMILMPL TYSIAYGLLGGIGTFVILHVWDWGVAVWLKLTKLFGLIVGGKNSAKEETAVDGKPAGGRQNVISHPLEWPSRTAHWVPLEAPPPYAADPPSFPVHMLVLG THTSYDLRNYLRIADALLPTCDVEVKID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Lus10025246 [exp]	0	1
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10020381 [exp]	2.0	0.8412
					Lus10018908 [exp]	4.6	0.8362
AT1G59940		ARR3	response regulator 3 (.1)		Lus10030822 [exp]	6.3	0.8362
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Lus10011582 [exp]	10.5	0.8304
AT3G28910	MYB	AtMYB30, MYB30	myb domain protein 30 (.1)		Lus10015369 [exp]	13.5	0.8718
AT1G02050		LAP6	LESS ADHESIVE POLLEN 6, Chalco...		Lus10039904 [exp]	19.0	0.8677
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10034573 [exp]	31.5	0.7846
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10025321 [exp]	38.1	0.8078
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008534 [exp]	38.3	0.8389
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039486 [exp]	41.8	0.7628

Compare expression of checked genes

Lus10025246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.