Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15780 141 / 4e-42 Cupredoxin superfamily protein (.1) AT2G15770 103 / 4e-27 Cupredoxin superfamily protein (.1) AT4G33930 85 / 1e-19 Cupredoxin superfamily protein (.1) AT4G34300 76 / 8e-17 Cupredoxin superfamily protein (.1) AT3G27200 47 / 1e-06 Cupredoxin superfamily protein (.1) AT4G32490 41 / 0.0002 AtENODL4 early nodulin-like protein 4 (.1) AT5G53870 40 / 0.0007 AtENODL1 early nodulin-like protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009079 [exp] 313 / 1e-110 AT2G15780 143 / 8e-43 Cupredoxin superfamily protein (.1) Lus10022350 [exp] 50 / 1e-07 AT3G27200 169 / 7e-54 Cupredoxin superfamily protein (.1) Lus10002618 [exp] 46 / 1e-06 AT3G27200 89 / 2e-23 Cupredoxin superfamily protein (.1) Lus10041570 [exp] 46 / 2e-06 AT3G27200 167 / 2e-53 Cupredoxin superfamily protein (.1) Lus10020276 [exp] 44 / 2e-05 AT1G45063 116 / 9e-30 copper ion binding;electron carriers (.1.2) Lus10025536 [exp] 42 / 7e-05 AT2G27035 148 / 5e-46 early nodulin-like protein 20 (.1) Lus10026064 [exp] 41 / 0.0002 AT5G15350 113 / 4e-32 early nodulin-like protein 17 (.1) Lus10002617 [exp] 41 / 0.0003 AT3G53330 105 / 1e-26 plastocyanin-like domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G106000 [exp] 171 / 9e-55 AT2G15780 151 / 5e-46 Cupredoxin superfamily protein (.1) Potri.009G136200 [exp] 45 / 4e-06 AT5G26330 88 / 4e-22 Cupredoxin superfamily protein (.1) Potri.017G011200 [exp] 45 / 4e-06 AT4G32490 157 / 2e-48 early nodulin-like protein 4 (.1) Potri.001G332200 [exp] 43 / 2e-05 AT3G27200 171 / 5e-55 Cupredoxin superfamily protein (.1) Potri.013G054500 [exp] 43 / 2e-05 AT3G17675 91 / 3e-24 Cupredoxin superfamily protein (.1) Potri.019G037800 [exp] 42 / 4e-05 AT3G17675 98 / 4e-27 Cupredoxin superfamily protein (.1) Potri.001G398800 [exp] 42 / 0.0001 AT4G28365 145 / 9e-42 early nodulin-like protein 3 (.1) Potri.011G117800 [exp] 42 / 0.0001 AT5G53870 158 / 3e-45 early nodulin-like protein 1 (.1) Potri.003G183300 [exp] 41 / 0.0001 AT5G15350 123 / 1e-35 early nodulin-like protein 17 (.1) Potri.013G030000 [exp] 39 / 0.0004 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10025269 pacid=23157431 polypeptide=Lus10025269 locus=Lus10025269.g ID=Lus10025269.BGIv1.0 annot-version=v1.0 ATGGCACCACTTTACGCAGTACATGCAACTGCTATGATCGTGATCCTGCTGAGCTCCGCCGCTTTGGGTATCACGTCGGCCAACAAAGACTGGGGCAACG GCAACTACGGCGGCGGTTGGGGCGGCCGCGGTGACTCGCCGAGGAACCGCCAGCCCAGCGAGCACACTCAGAGGAAGATAGTGGTGGGCGGGAAACAGAC TTGGGAATTCGGCTTTGACTATACTAACTGGGCCATGCGCAATGGGCCTTTCTTCGTCAACGACACTTTAGTGTTTAAGTACAAGATGCCGACGGACAAC AGTACCAGGCCACACAGCGTGTACCAGCTGCCGGATTTGAGGAGCTTCTTGAAGTGTGACGTCAGCAAGGGAAAGATGTTGGCCAACTGGACTGACGGCG GCGGCAAAGGGTTTGAGTTCACAATGGACAAGTGGCAGCCTTACTTCTTCGCATGTGGGTCTGGCAACGGAATCCATTGCAATCTTGGCCGGATGAAGTT CTTCGTCGTCCCCCTCCTCCCTCGCTGGTGGAACTACTGA
AA sequence Show only first row Show all	>Lus10025269 pacid=23157431 polypeptide=Lus10025269 locus=Lus10025269.g ID=Lus10025269.BGIv1.0 annot-version=v1.0 MAPLYAVHATAMIVILLSSAALGITSANKDWGNGNYGGGWGGRGDSPRNRQPSEHTQRKIVVGGKQTWEFGFDYTNWAMRNGPFFVNDTLVFKYKMPTDN STRPHSVYQLPDLRSFLKCDVSKGKMLANWTDGGGKGFEFTMDKWQPYFFACGSGNGIHCNLGRMKFFVVPLLPRWWNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15780			Cupredoxin superfamily protein...		Lus10025269 [exp]	0	1
AT3G22060			Receptor-like protein kinase-r...		Lus10039699 [exp]	1.7	0.8753
					Lus10027418 [exp]	2.0	0.8258
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10005343 [exp]	3.5	0.8550
AT3G22060			Receptor-like protein kinase-r...		Lus10039698 [exp]	3.9	0.8507
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10029511 [exp]	5.3	0.7547
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10040475 [exp]	5.7	0.8061
AT1G02360			Chitinase family protein (.1)		Lus10009968 [exp]	11.2	0.8183
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014689 [exp]	11.5	0.8039
AT4G27290			S-locus lectin protein kinase ...		Lus10014813 [exp]	13.4	0.8235
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10006302 [exp]	14.5	0.7510

Compare expression of checked genes

Lus10025269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.