Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02540 357 / 6e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 331 / 6e-114 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23420 257 / 1e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G11410 256 / 3e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 254 / 1e-83 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G64590 202 / 6e-63 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G24050 198 / 1e-61 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 182 / 2e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G27760 74 / 1e-14 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53090 67 / 1e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024415 [exp] 504 / 0 AT5G02540 471 / 4e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10023762 [exp] 404 / 2e-142 AT2G37540 429 / 8e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024647 [exp] 284 / 2e-95 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024648 [exp] 276 / 2e-92 AT4G23430 447 / 2e-159 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035481 [exp] 271 / 2e-90 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031101 [exp] 270 / 5e-90 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024649 [exp] 270 / 8e-90 AT4G11410 446 / 5e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032282 [exp] 268 / 5e-89 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10028781 [exp] 267 / 1e-88 AT4G11410 470 / 3e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083900 [exp] 403 / 5e-142 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 267 / 1e-88 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.003G128700 [exp] 261 / 3e-86 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G143600 [exp] 254 / 5e-83 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 251 / 2e-82 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G103000 [exp] 244 / 7e-80 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G143800 [exp] 244 / 8e-80 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G081102 [exp] 193 / 1e-59 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 193 / 1e-59 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G087800 [exp] 191 / 6e-59 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10025321 pacid=23157393 polypeptide=Lus10025321 locus=Lus10025321.g ID=Lus10025321.BGIv1.0 annot-version=v1.0 ATGAAAGGACTTTATTTAAGACGTGGGGCAAGCGGGATTGGATTCGAGACGGCAAGAGTTCTTGCACTACACAGAGCTCATGTCATCATCGGTGCGAGGA ACATTGGAGCCGCCGACGAAGCCAAACGCCTAATCCTTAAAGACATCAACGACGCTCATGTCGATATCTTGCAGCTCGATTTGTCTTCCATCAAATCCGT CACAGCCTTTGCTGACAGCTTCAAATCCCTCAATCTCCCACTCAACATCCTCATTAACAATGCTGGAGTGATGTTCTGTCCATACAAGACGTCCGAAGAT GGGATAGAGATGCAATTCGCAACAAACCATCTCGGACATTTTCTGCTGACAAACCTTCTGCTAGAAAAAATGAAAGAGACAGCAAAAGCTACAGGCGTCC AGGGCAGGATCATAAATCTGTCCTCCATTGCTCACGTCCACACTTACAAACGCGGCATTCCCTTTGATCACATCAACGACAAAAAATGGTACTGTGACAA ACGGGCTTACGGCCAATCCAAACTAGCCAACATCCTGCATGCCAAAGAGCTTTCCCGTCGACTACATGAAGAAGGAGTAAACATTACCGCAAATGCAGTC CATCCAGGGCTCATCATGACTCCTCTGTTTAGATACTCTGCCATTTCCATGAGAATTTTAAAGTTCTTTTCCAACTTCCTATGGAAGAACGTGCCTCAGG GAGCTGCAACAACGTGTTACGCAGCGCTGCATCCGGCAATGAAAGGAGTGACGGGGAAGTACTTGGCGGACTGCAATGAGGTTCAACCAAGCGCCTATGC CATGGATGAAATGCTGGCTAGGAGTCTCTGGGATTTCAGCATCCAACTCATTAACTCTGCTGCTTCTTCTACTGATAATAAAGCTTAA
AA sequence Show only first row Show all	>Lus10025321 pacid=23157393 polypeptide=Lus10025321 locus=Lus10025321.g ID=Lus10025321.BGIv1.0 annot-version=v1.0 MKGLYLRRGASGIGFETARVLALHRAHVIIGARNIGAADEAKRLILKDINDAHVDILQLDLSSIKSVTAFADSFKSLNLPLNILINNAGVMFCPYKTSED GIEMQFATNHLGHFLLTNLLLEKMKETAKATGVQGRIINLSSIAHVHTYKRGIPFDHINDKKWYCDKRAYGQSKLANILHAKELSRRLHEEGVNITANAV HPGLIMTPLFRYSAISMRILKFFSNFLWKNVPQGAATTCYAALHPAMKGVTGKYLADCNEVQPSAYAMDEMLARSLWDFSIQLINSAASSTDNKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10025321 [exp]	0	1
AT2G36110			Polynucleotidyl transferase, r...		Lus10043049 [exp]	1.0	0.9771
					Lus10015131 [exp]	1.4	0.9630
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10005279 [exp]	3.5	0.9273
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10008208 [exp]	5.3	0.9157
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018351 [exp]	5.5	0.8958
AT2G35760			Uncharacterised protein family...		Lus10039060 [exp]	6.1	0.8232
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10013956 [exp]	7.5	0.8948
					Lus10004133 [exp]	8.2	0.8583
AT3G57440			unknown protein		Lus10031072 [exp]	8.9	0.8877
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10033355 [exp]	11.5	0.8781

Compare expression of checked genes

Lus10025321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.