Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09370 411 / 2e-139 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT5G02320 409 / 4e-138 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT5G11510 284 / 5e-87 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT4G32730 277 / 2e-84 MYB ATMYB3R-1, PC-MYB1, ATMYB3R1 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) AT4G00540 217 / 2e-65 MYB MYB3R-2, PC-MYB2, ATMYB3R2 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-2, myb domain protein 3r2 (.1.2) AT2G13960 163 / 5e-48 MYB Homeodomain-like superfamily protein (.1.2) AT4G18770 155 / 4e-42 MYB ATMYB98 myb domain protein 98 (.1) AT5G58850 152 / 7e-41 MYB ATMYB119 myb domain protein 119 (.1) AT3G27785 152 / 8e-41 MYB PGA37, ATMYB118 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) AT5G11050 151 / 2e-40 MYB ATMYB64 myb domain protein 64 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024394 [exp] 904 / 0 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10022136 [exp] 285 / 1e-85 AT4G32730 682 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10011687 [exp] 288 / 2e-85 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10038623 [exp] 263 / 1e-78 AT4G32730 376 / 3e-118 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10008010 [exp] 211 / 2e-62 AT5G02320 237 / 3e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Lus10037898 [exp] 171 / 1e-45 AT4G32730 266 / 4e-77 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10042111 [exp] 153 / 3e-41 AT4G18770 249 / 8e-79 myb domain protein 98 (.1) Lus10002384 [exp] 152 / 9e-41 AT4G18770 250 / 7e-79 myb domain protein 98 (.1) Lus10027695 [exp] 153 / 2e-40 AT4G18770 276 / 1e-87 myb domain protein 98 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G085600 [exp] 508 / 2e-176 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.006G241700 [exp] 286 / 3e-86 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.018G038000 [exp] 280 / 5e-84 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.014G079300 [exp] 237 / 2e-71 AT4G32730 266 / 5e-80 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.003G123800 [exp] 224 / 1e-67 AT3G09370 231 / 3e-70 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Potri.001G347200 [exp] 156 / 4e-42 AT3G27785 223 / 8e-68 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Potri.005G118500 [exp] 153 / 4e-41 AT4G18770 234 / 2e-72 myb domain protein 98 (.1) Potri.012G082000 [exp] 153 / 4e-41 AT4G18770 268 / 2e-85 myb domain protein 98 (.1) Potri.009G044100 [exp] 151 / 3e-40 AT5G58850 224 / 5e-68 myb domain protein 119 (.1) Potri.015G077700 [exp] 149 / 7e-40 AT4G18770 300 / 4e-98 myb domain protein 98 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10025351 pacid=23157372 polypeptide=Lus10025351 locus=Lus10025351.g ID=Lus10025351.BGIv1.0 annot-version=v1.0 ATGGATGAGGCTAAGGTGGAAGAGTGTTGCCGTGAAAATAAGCAACAAACGACTGCTTCAAGTTCATCTATCTCGGAGGGTTGTGGGAGTGCTGTTCTCA AATCTCCTGGAGTTTCAAGTCCAACCACAGCATCACCAATTCATAGGAGGACCACGGGGCCTATCAGGCGAGCTAAAGGCGGCTGGACCCCTGAAGAGGA TGAGACGTTGAGAAAGGCTGTTGCAGCTTATAAGGGGAAGAGTTGGAAGAAAATAGCTGAATATTTTCCTGACAGATCAGAAGTTCAATGTCTGCATCGG TGGCAAAAGGTTCTGAACCCTGATCTTGTGAAAGGACCCTGGACTCCTGAGGAGGATGATAAGATTGTCAAGTTGGTTACAAAATATGGACCAACAAAAT GGTCTGTCATAGCAAAGTCCTTACCAGGCCGCATAGGGAAACAATGCCGGGAAAGGTGGCACAATCATCTTAATCCTGATATAAAAAAAGATGCATGGAC ACTAGAGGAGGAATTGGCGCTTGTAAATGCCCATCGCATGCATGGGAACAAATGGGCTGAAATAGCTAAGATGTTGCCTGGCAGGACTGACAACTCGATA AAAAATCACTGGAATAGTTCTTTGAAGAAAAAGTTGGACTTTTATATGGTCACTGGGAAACTACCTTTGGGTCAAAGGAATGGAGTCCAAAAGGGTTCAG TAGAAGTAAACAGACATGGTCTGACCAGAACTAGTAAGGAATCCGATTCTACGGCCCAAACCTCATCAGATACTACCGTTATTTGTAGGCTGGAAGAAGG TAATAGCAAGGATCAACTGGAATCGTCTGCTCATCTGCCGAGTTTGGTTGCTGATTCTGAATGCAGAGTACAGACGAGTTTAGATGCTAGTAGTTGCGAT AATATTGAGTTAAGACAAAACTTTGAGGCCTGTGGACTGAATGGCGAAGTGAATAAAGGGTTAAGTGTAGGATCTCCACTGGTTGCTGCAACACCCTCAC GTAGTTATCTACGGTACGAGCTACCTTCGGAGCCAGATCGTTGCTTACGGCAAGAGTACAGTTCCAGTCCAGTCTCTTCTTCTCCAGTTGGATTCTTCAC TCCACAATCTGCAAGCAGTAGTAGTGGTTTAAGTGTACAAAGCCCAGAAACAAGATTGAGAATTGCTGCCCAGACCTACCCCAACACGCCGTCCATATTC CGGAAGAGGAAGACTGTAGATAGAGCATCGATTCCTAGTAGTAGTAGCAAACTAGACAAAGAAGAAGGAACATCAATCAGTCAGTTGAACCAGAAACCGA CCTTGCACAGTAGTCCTAGCTTGGTAGATATTGGTAGTAGCAATCTGAAGTCTTTTAATGCATCTCCTCCATATCGACTCAGACCGAAGAGGACACCTGT TCTCAAATCTGTTGAAAGGCAGCTGGAATTTAGTTTCGAGGAGGATCCACGTCATGATGTTGAAACTAAAGCTGTTAGATACTCCACAGAAGGAAGTTCC CCTGCTCCTAAGATGGCTGTAACATAG
AA sequence Show only first row Show all	>Lus10025351 pacid=23157372 polypeptide=Lus10025351 locus=Lus10025351.g ID=Lus10025351.BGIv1.0 annot-version=v1.0 MDEAKVEECCRENKQQTTASSSSISEGCGSAVLKSPGVSSPTTASPIHRRTTGPIRRAKGGWTPEEDETLRKAVAAYKGKSWKKIAEYFPDRSEVQCLHR WQKVLNPDLVKGPWTPEEDDKIVKLVTKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLEEELALVNAHRMHGNKWAEIAKMLPGRTDNSI KNHWNSSLKKKLDFYMVTGKLPLGQRNGVQKGSVEVNRHGLTRTSKESDSTAQTSSDTTVICRLEEGNSKDQLESSAHLPSLVADSECRVQTSLDASSCD NIELRQNFEACGLNGEVNKGLSVGSPLVAATPSRSYLRYELPSEPDRCLRQEYSSSPVSSSPVGFFTPQSASSSSGLSVQSPETRLRIAAQTYPNTPSIF RKRKTVDRASIPSSSSKLDKEEGTSISQLNQKPTLHSSPSLVDIGSSNLKSFNASPPYRLRPKRTPVLKSVERQLEFSFEEDPRHDVETKAVRYSTEGSS PAPKMAVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10025351 [exp]	0	1
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	5.4	0.8175
AT5G66180			S-adenosyl-L-methionine-depend...		Lus10028444 [exp]	8.1	0.7971
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	8.4	0.8066
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10009279 [exp]	11.0	0.7791
AT1G03370			C2 calcium/lipid-binding and G...		Lus10001915 [exp]	11.1	0.7958
AT4G00590			N-terminal nucleophile aminohy...		Lus10040935 [exp]	13.0	0.7518
AT1G27180			disease resistance protein (TI...		Lus10018658 [exp]	16.9	0.7556
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	17.2	0.7850
AT5G65540			unknown protein		Lus10035950 [exp]	20.8	0.7333
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	21.3	0.7762

Compare expression of checked genes

Lus10025351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.