Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37630 360 / 5e-124 MYB AtPHAN, AtMYB91, MYB91, AS1 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) AT5G56110 100 / 9e-24 MYB MS188, ATMYB80, AtMYB103 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1) AT5G59780 97 / 2e-23 MYB ATMYB59, ATMYB59-1, ATMYB59-3, ATMYB59-2 myb domain protein 59 (.1.2.3) AT3G46130 97 / 2e-23 MYB PFG3, ATMYB111 ATMYB48, ATMYB48-3, ATMYB48-1, ATMYB48-2 myb domain protein 48 (.1.2.3.4) AT1G25340 97 / 6e-23 MYB ATMYB116 myb domain protein 116 (.1.2) AT1G66370 96 / 7e-23 MYB ATMYB113 myb domain protein 113 (.1) AT5G52600 95 / 7e-23 MYB AtMYB82 myb domain protein 82 (.1) AT5G14750 93 / 2e-22 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) AT3G01530 92 / 4e-22 MYB ATMYB57 myb domain protein 57 (.1) AT1G68320 94 / 5e-22 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024392 [exp] 475 / 4e-169 AT2G37630 456 / 3e-161 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Lus10040063 [exp] 101 / 9e-24 AT2G32460 229 / 1e-69 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10009037 [exp] 97 / 3e-23 AT1G68320 231 / 1e-75 myb domain protein 62 (.1) Lus10009522 [exp] 98 / 5e-23 AT1G08810 284 / 9e-96 myb domain protein 60 (.1.2) Lus10035275 [exp] 100 / 6e-23 AT2G32460 233 / 5e-70 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10005886 [exp] 96 / 8e-23 AT3G46130 265 / 1e-89 myb domain protein 48 (.1.2.3.4) Lus10021539 [exp] 99 / 1e-22 AT2G32460 226 / 5e-67 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10041435 [exp] 97 / 1e-22 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10027189 [exp] 98 / 2e-22 AT2G32460 243 / 1e-73 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G085900 [exp] 388 / 1e-134 AT2G37630 414 / 2e-144 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Potri.004G102600 [exp] 230 / 4e-73 AT2G37630 243 / 9e-78 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Potri.017G112300 [exp] 196 / 1e-59 AT2G37630 188 / 2e-56 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Potri.011G040400 [exp] 103 / 2e-25 AT2G31180 163 / 6e-49 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.015G046200 [exp] 103 / 6e-25 AT1G25340 241 / 2e-78 myb domain protein 116 (.1.2) Potri.012G055600 [exp] 102 / 2e-24 AT1G68320 244 / 1e-79 myb domain protein 62 (.1) Potri.008G122100 [exp] 100 / 5e-24 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.017G126000 [exp] 95 / 2e-22 AT1G66370 188 / 5e-59 myb domain protein 113 (.1) Potri.009G027300 [exp] 94 / 2e-22 AT3G46130 279 / 3e-95 myb domain protein 48 (.1.2.3.4) Potri.011G167600 [exp] 96 / 3e-22 AT5G56110 338 / 3e-116 MALE STERILE 188, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 80, myb domain protein 103 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10025355 pacid=23157364 polypeptide=Lus10025355 locus=Lus10025355.g ID=Lus10025355.BGIv1.0 annot-version=v1.0 ATGAAAGAGAGGCAGCGTTGGAGAGCTGAAGAGGACGCCTTACTACGTTCTTACGTCAAACGATATGGACCAAGGGAATGGAACCTCGTCTCCCAGCGCA TGAACACACCCTTAAACCGCGACGCCAAATCCTGCTTGGAACGCTGGAAGAACTACCTCAAACCAGGAATCAAGAAAGGATCTCTCACCGAAGAAGAGCA GCATCTAGTCATCAAACTACAAGAGAAATACGGCAACAAGTGGAAGAAAATCGCAGCCGAAGTCCCCGGAAGAACAGCCAAACGACTCGGGAAGTGGTGG GAAGTCTTCAAGGAGAAGCAACATAGAGAGAAGAAGGAAACTAGCAAGACTCCACTCGAGCCTATCGACGAGTCCAAGTACGATCGCATCCTCGAGACCT TCGCCGAGAAGCTGGTCAAGGAAAGAACAACACCACCTCCTCCTACAGGATTCGCTATGGCAGCTTCTAATGGAAGCAACTATCTTCACACTACTGATCA TCATCATCTTCATCAACCTGCAATGCTGCCACCGTGGCTTTCTAGTTCCAACGGTGCAGTAAGGCCTCCTCCTGCTCCATCGGTGACATTGAGTCTTTCG AGCTCGACTGTTGCTGCTGGTGGCGCTTCTCCATCGATACCATGGCTGCAGCCTGCTGACCTCCCCCCACCACCACCACTACCACCACCGGCAGGATTTA GCAATGAGAGTTTGGTGGTGAACGACCTGGTGGAATGCTGCAGGGAGCTGGATGAAGGGCATCGGGCATGGGCGGCGCATAAGAAGGAAGCTGCTTGGAG GCTGAGGAGGGTTGAGTTGCAGTTGGAGTCGGAAAAGTCATGTATGATGAAGGAGAAATCGGAGGAGATAGAGGCGAAGATAAGAGCGATGAGGGAAGAG CAAAAGGCTGCACTCGATGCTATTGAAGAGGAGTATAGAGAGCAGCTGGCTGGGTTGAGGAGGGACGCTGAAGCTAAGGAGCAGAAATTGGCTGATCAGT GCAGAAGTTGA
AA sequence Show only first row Show all	>Lus10025355 pacid=23157364 polypeptide=Lus10025355 locus=Lus10025355.g ID=Lus10025355.BGIv1.0 annot-version=v1.0 MKERQRWRAEEDALLRSYVKRYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQHLVIKLQEKYGNKWKKIAAEVPGRTAKRLGKWW EVFKEKQHREKKETSKTPLEPIDESKYDRILETFAEKLVKERTTPPPPTGFAMAASNGSNYLHTTDHHHLHQPAMLPPWLSSSNGAVRPPPAPSVTLSLS SSTVAAGGASPSIPWLQPADLPPPPPLPPPAGFSNESLVVNDLVECCRELDEGHRAWAAHKKEAAWRLRRVELQLESEKSCMMKEKSEEIEAKIRAMREE QKAALDAIEEEYREQLAGLRRDAEAKEQKLADQCRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10025355 [exp]	0	1
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Lus10024392 [exp]	1.0	0.8989
AT3G06868			unknown protein		Lus10001474 [exp]	2.0	0.8855
AT4G21970			Protein of unknown function, D...		Lus10020043 [exp]	2.2	0.8626
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Lus10025165 [exp]	3.5	0.8734
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10014717 [exp]	3.9	0.8754
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014327 [exp]	6.3	0.8559
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10014326 [exp]	6.5	0.8419
AT2G37560		ATORC2	origin recognition complex sec...		Lus10024412 [exp]	7.7	0.8389
					Lus10018968 [exp]	8.3	0.8299
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10024350 [exp]	8.4	0.8567

Compare expression of checked genes

Lus10025355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.