Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57480 486 / 2e-170 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 455 / 9e-159 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30250 390 / 7e-133 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 296 / 5e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 293 / 7e-96 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 291 / 6e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28580 283 / 1e-91 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40010 282 / 7e-91 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G50940 279 / 2e-90 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 279 / 2e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006968 [exp] 496 / 2e-177 AT5G57480 399 / 3e-137 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10042166 [exp] 300 / 2e-97 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014496 [exp] 298 / 3e-97 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 295 / 7e-96 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015354 [exp] 290 / 5e-94 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014498 [exp] 275 / 5e-88 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015349 [exp] 271 / 9e-87 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015802 [exp] 269 / 2e-86 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037004 [exp] 269 / 3e-86 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G093600 [exp] 494 / 8e-174 AT5G57480 743 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G169000 [exp] 473 / 2e-165 AT5G57480 776 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G024400 [exp] 298 / 3e-97 AT4G25835 362 / 4e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G231200 [exp] 298 / 5e-97 AT4G25835 359 / 1e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G067400 [exp] 296 / 1e-96 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047950 [exp] 293 / 4e-95 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 290 / 2e-94 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 290 / 2e-94 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020800 [exp] 291 / 3e-94 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 290 / 4e-94 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10025479 pacid=23150854 polypeptide=Lus10025479 locus=Lus10025479.g ID=Lus10025479.BGIv1.0 annot-version=v1.0 ATGGATCGCACCGGAGAAATCCGGCGCCGGAATCAGGATCGGCTGCTGTATACGAACTCCAGAGGCGGATCTCTTGATGCCAGAGGACACCCGTGGGAGT CGGTGCCGTTTAAGCATCCGAGCACTTTCGAGACTCTGGCGATGGATCCGGTGAAGAAGGTCGAGATTATGAACGATCTGAAGGATTTCGCCGGCGGTCA GGACTTCTACCAGCGGACTGGTAGAGCTTGGAAACGGGGTTACTTGCTGTACGGACCTCCGGGGACGGGGAAATCGAGCATGATCGCCGCCATGGCGAAT TTCCTTGGGTACGACATCTACGATCTGGAATTGACTGAGGTTCACAACAATTCAGAGCTCCGGAAGCTGCTGATGAAGACGAGCTCCAAGTCAATTATTG TGATTGAAGACATCGATTGCTCGATTAACCTAGGGAATCGGAAGAAGAGCAATCGAAACAGTAGCTATTACGATCCGACGGCGGAGATGCGACTCGGCGG CGGAGTAGGAGGAGGAGCAGGTTCGGATTCCGACGGAGGAGGAAACTCGATTACTCTCTCCGGATTGCTGAACTTCACCGACGGGCTCTGGTCTTGCTGC GGGAGCGAGAGGATCTTCGTCTTCACTACGAACCACGTCGAAAAGCTGGACCCAGCTCTGCTCAGGAGCGGGAGGATGGATATGCACATTTTCATGAGCT ACTGTTCTTTCCCAGCATTGAAGATTCTACTGAAGAATTACCTAGGCTTTGTCGACGAAGAGAAACACAGCGACGGCGACGTTTTGAGGGGGATCGAGGA GGTGATCGGGAGAGCGGAGCTGACCCCGGCGGACGTGAGCGAGGTACTGATTAAGAACCGGAGGGATGCGGTGAAGGCGGTGGCGGAGCTGCTTGAGATT ATGAAGCAGAGAACCGAGGGGAATGGCGGCGGGAGGGGGAAGAGATTGAACGACGTTGGGGAAGAGGAAGAGCAGGAGAAGAGAGCTCTGGTTGAGGAAG AAGGGGTCGGTGGTTACGATTATGAACAGAGCATTGTTGATGATGAAGAAGTAGAAGATGAAGAAGAAGATTCTTTGGGGAAGAAGAAGAAGAAGAATGA ATCGATTGATTGA
AA sequence Show only first row Show all	>Lus10025479 pacid=23150854 polypeptide=Lus10025479 locus=Lus10025479.g ID=Lus10025479.BGIv1.0 annot-version=v1.0 MDRTGEIRRRNQDRLLYTNSRGGSLDARGHPWESVPFKHPSTFETLAMDPVKKVEIMNDLKDFAGGQDFYQRTGRAWKRGYLLYGPPGTGKSSMIAAMAN FLGYDIYDLELTEVHNNSELRKLLMKTSSKSIIVIEDIDCSINLGNRKKSNRNSSYYDPTAEMRLGGGVGGGAGSDSDGGGNSITLSGLLNFTDGLWSCC GSERIFVFTTNHVEKLDPALLRSGRMDMHIFMSYCSFPALKILLKNYLGFVDEEKHSDGDVLRGIEEVIGRAELTPADVSEVLIKNRRDAVKAVAELLEI MKQRTEGNGGGRGKRLNDVGEEEEQEKRALVEEEGVGGYDYEQSIVDDEEVEDEEEDSLGKKKKKNESID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57480			P-loop containing nucleoside t...		Lus10025479 [exp]	0	1
AT5G57480			P-loop containing nucleoside t...		Lus10006967 [exp]	1.4	0.8965
AT5G57480			P-loop containing nucleoside t...		Lus10006968 [exp]	2.0	0.8891
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Lus10028301 [exp]	7.3	0.8516
AT2G23950			Leucine-rich repeat protein ki...		Lus10019963 [exp]	8.0	0.8505
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10036132 [exp]	9.8	0.8300
AT3G50530		CRK	CDPK-related kinase (.1.2)		Lus10009342 [exp]	10.2	0.8203
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10038892 [exp]	12.8	0.8033
AT3G52490			Double Clp-N motif-containing ...		Lus10008970 [exp]	13.8	0.8477
AT2G30933			Carbohydrate-binding X8 domain...		Lus10031443 [exp]	17.3	0.7710
AT3G15630			unknown protein		Lus10033048 [exp]	19.1	0.7188

Compare expression of checked genes

Lus10025479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.