Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13420 823 / 0 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT1G60160 714 / 0 Potassium transporter family protein (.1) AT1G31120 622 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT2G35060 621 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT2G30070 615 / 0 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT4G33530 609 / 0 KUP5 K+ uptake permease 5, K+ uptake permease 5 (.1) AT5G09400 590 / 0 KUP7 K+ uptake permease 7, K+ uptake permease 7 (.1) AT2G40540 585 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT5G14880 583 / 0 Potassium transporter family protein (.1) AT1G70300 576 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027004 [exp] 1469 / 0 AT4G13420 828 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10013304 [exp] 758 / 0 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10012993 [exp] 677 / 0 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1) Lus10018324 [exp] 642 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10003402 [exp] 627 / 0 AT5G09400 1296 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10030857 [exp] 624 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 615 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10036221 [exp] 612 / 0 AT2G35060 1173 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10038361 [exp] 606 / 0 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G132500 [exp] 1138 / 0 AT4G13420 852 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G069650 [exp] 801 / 0 AT4G13420 951 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G045200 [exp] 800 / 0 AT4G13420 978 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G069799 [exp] 789 / 0 AT4G13420 845 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.010G094400 [exp] 714 / 0 AT1G60160 1209 / 0.0 Potassium transporter family protein (.1) Potri.003G023900 [exp] 641 / 0 AT5G09400 1120 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Potri.001G123800 [exp] 631 / 0 AT2G35060 1149 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109700 [exp] 627 / 0 AT2G35060 1155 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.001G205500 [exp] 627 / 0 AT5G09400 1081 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Potri.003G109800 [exp] 596 / 0 AT2G35060 985 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10025493 pacid=23145049 polypeptide=Lus10025493 locus=Lus10025493.g ID=Lus10025493.BGIv1.0 annot-version=v1.0 ATGTCTGCCGATACCATTACTCCAACTGTTGACGACGACCGTAACAAAGACGACGATGATGAACAAGTACTCTCTCCACAACTTAACTGCAACAACATCG TCGCAGTACCCATCAAAAGTTTGCGACGCTTCGACTCCCTGGAGGTCGAAGCCGGCAAGTTCGCCGATCGTGGCAACCACGGCGTTAAGGAAGCAAGCTG GGGAGTGGTGCTTCAGCTGGCGTTCCAGAGCATCGGAGTGGTTTACGGGGACATAGGGACGTCGCCGTTGTACGTATACGCCAGCACTTTCGGCAAAGGC ATCAACCACAAAGACGACGTATTGGGCGTTCTCTCTTTGATCATATATACCGTGACGTTGATCCCTCTCCTCAAGTACGTCTTCATCGTCTTGCGAGCCA ACGACAATGGCGACGGTGGGACGTTTGCGTTGTATTCGCTAATATGCCGATACGCGAGGGTGGGGCTGATTCCGAGCCAACAAGTGGAAGACGGCCAAGT GTCGAATTTTCAGTTGCAGTTGCCAAGCAAGCAATTGGAGAGGGGTTCCAGGTTGAAGTCAATGTTGGAGAAGAGTGTTTCTGCAAAGTATTTTCTACTT TTTGCGACCATGTTGGGTACCTCTATGGTTATTGGCGACGGCATCCTCACTCCTTGCATTTCCGTGCTATCTGCAGTGGGAGGGATGAAGGAGGCTACTG AGTCTATGACTCAAGAGTCCAACATGACTCTGTCGGACAGTTTAGATTCAATAATTGATATTTTTGTAGAGATGATCGTGTGGATATCAGTAGCTATTTT GATAATGTTGTTCGGGGTTCAGCGGTTTGGAACCGACAAAGTAGGCTACAGTTTCGCGCCGATTATCTGCGTCTGGTTCCTACTCATCGGTGGCATCGGA TGCTACAATTTCATAAAGTACGATCCGACAGTGTTGAAAGCCCTGAACCCCAAGTACATGATAGACTACTTCAACAGAAACAAAAAGGAAGCATGGATCT CACTAGGAGGAGTCGTCCTCGCCACCACAGGGACCGAAGCATTGTTCGCTGATGTCGGCCACTTCACAGTTCGGTCCATTCAAATCAGCATGTGTTGTGT CACTTACCCTGCTCTCCTTCTTGCCTACACTGGCCAAGCTTCTTTCCTAACCAAACACCCCGACCTTGTCTCTGACACTTTCTACAAATCCATACCGGGC GGTTTGTATTGGCCGATGTTCTTGGTAGCTGTTCTAGCATCGATCATTGCGAGCCAGGCTATGATCTCCGGGACTTTCGCAATAATCCAACAGTCGCTCT CCCTTGGATGCTTCCCTCGGGTGAAGATTGTGCATACTTCTTCTAAGTTTGCTGGACAGGTTTATATTCCAGAAGTCAATTACCTTCTGATGCTGGCATG TATTGGTGTCACCGTTGGGTTCCAAACTACTGCCAAGATCGGCAATGCCTACGGAATTGCGGTGGTGTTCGTTATGACACTGACGTCATCATTTCTGGTA CTAATCATGCTAATGATATGGAACACCAACATACTATTGGTAATTGGCTTCGTTCTAACAATCGGAAGCGTGGAGATTGTGTACCTAAGTTCAGTCCTTT ACAAGTTCAACCAAGGTGGATACCTCCCGTTGGGATTCGCTGCAACACTAATGACCATCATGTACGTGTGGAACGATGTATACCGAATGAAGTACTACTA CGAGCTTGATCACAAGGTTTCCTCAGACAGTGTTAAGGACATTGTAGCCGACACAGTACATCTGAGCAAACTTCCCGGACTAGCCCTCTTCTACTCCGAA CTTGTCCAGGGCATCCCGCCAATCTTCAGCCACTACTTAGCCAACGTCCCTGCATTGCATTCACTACTAGTGTTCGTCTCCATCAAGTCCTTGCCCATTG GCAGGGTCCCCATCGAGGAGAGGTTCCTTTTCCGTAGAGTAGACCCCAAGGAGCTCAACATGTTTCGATGTGTAGCTAGATACGGATACACTGATGTCAG GAATCAGGGGGAGGAGTCGTTCGAGGCTATGCTAGTTGAGAAACTGAAGGAGTTCATCGTGGAGAGCTACTGGTTCTCGGAAACAAATGCGGGGAAAGGA GGAGGGCATGATCATGCCGAGGAGTTGGAGAAAGAGATGGAGATGGTTAACAAGGCGTGGGAGGCCGGTGTGATTCATTTGATGGGTGAGAACGAGGTGA TTGCTGGGAAAGGTGCGGGGATCGTGAAGCGTGTTCTTATCGATTATGCGTACAATTTTTTGAAGAAAAATGTGAGGCAGACCGAGAAGGTGTTTGATAT CCCGCACAAGCGGATGCTCAAAGTTGGTATGACTTACGAGCTCTAG
AA sequence Show only first row Show all	>Lus10025493 pacid=23145049 polypeptide=Lus10025493 locus=Lus10025493.g ID=Lus10025493.BGIv1.0 annot-version=v1.0 MSADTITPTVDDDRNKDDDDEQVLSPQLNCNNIVAVPIKSLRRFDSLEVEAGKFADRGNHGVKEASWGVVLQLAFQSIGVVYGDIGTSPLYVYASTFGKG INHKDDVLGVLSLIIYTVTLIPLLKYVFIVLRANDNGDGGTFALYSLICRYARVGLIPSQQVEDGQVSNFQLQLPSKQLERGSRLKSMLEKSVSAKYFLL FATMLGTSMVIGDGILTPCISVLSAVGGMKEATESMTQESNMTLSDSLDSIIDIFVEMIVWISVAILIMLFGVQRFGTDKVGYSFAPIICVWFLLIGGIG CYNFIKYDPTVLKALNPKYMIDYFNRNKKEAWISLGGVVLATTGTEALFADVGHFTVRSIQISMCCVTYPALLLAYTGQASFLTKHPDLVSDTFYKSIPG GLYWPMFLVAVLASIIASQAMISGTFAIIQQSLSLGCFPRVKIVHTSSKFAGQVYIPEVNYLLMLACIGVTVGFQTTAKIGNAYGIAVVFVMTLTSSFLV LIMLMIWNTNILLVIGFVLTIGSVEIVYLSSVLYKFNQGGYLPLGFAATLMTIMYVWNDVYRMKYYYELDHKVSSDSVKDIVADTVHLSKLPGLALFYSE LVQGIPPIFSHYLANVPALHSLLVFVSIKSLPIGRVPIEERFLFRRVDPKELNMFRCVARYGYTDVRNQGEESFEAMLVEKLKEFIVESYWFSETNAGKG GGHDHAEELEKEMEMVNKAWEAGVIHLMGENEVIAGKGAGIVKRVLIDYAYNFLKKNVRQTEKVFDIPHKRMLKVGMTYEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10025493 [exp]	0	1
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10024518 [exp]	1.4	0.9776
					Lus10002555 [exp]	1.4	0.9796
AT1G07160			Protein phosphatase 2C family ...		Lus10041072 [exp]	1.7	0.9774
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040765 [exp]	3.5	0.9727
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039689 [exp]	4.8	0.9627
AT3G52880		ATMDAR1	monodehydroascorbate reductase...		Lus10035593 [exp]	6.3	0.9701
AT5G11420			Protein of unknown function, D...		Lus10019724 [exp]	6.3	0.9719
AT2G26230			uricase / urate oxidase / nodu...		Lus10028868 [exp]	6.5	0.9672
AT1G03910			unknown protein		Lus10021530 [exp]	6.6	0.9629
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Lus10031079 [exp]	7.2	0.9680

Compare expression of checked genes

Lus10025493 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.