Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19890 401 / 5e-139 Peroxidase superfamily protein (.1) AT5G06730 347 / 3e-117 Peroxidase superfamily protein (.1) AT5G06720 339 / 1e-114 ATPA2 peroxidase 2 (.1) AT2G38390 333 / 5e-112 Peroxidase superfamily protein (.1) AT4G36430 330 / 4e-111 Peroxidase superfamily protein (.1) AT2G38380 325 / 1e-108 Peroxidase superfamily protein (.1) AT2G18150 322 / 7e-108 Peroxidase superfamily protein (.1) AT2G18140 315 / 4e-105 Peroxidase superfamily protein (.1) AT4G08780 312 / 1e-103 Peroxidase superfamily protein (.1) AT4G08770 311 / 1e-103 Prx37 peroxidase 37, Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026748 [exp] 631 / 0 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10004163 [exp] 330 / 7e-111 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10027989 [exp] 329 / 4e-110 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10027984 [exp] 325 / 8e-109 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10008168 [exp] 323 / 6e-108 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10008173 [exp] 323 / 1e-107 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10008167 [exp] 318 / 7e-106 AT5G06720 399 / 3e-139 peroxidase 2 (.1) Lus10027983 [exp] 313 / 9e-104 AT5G06730 370 / 2e-127 Peroxidase superfamily protein (.1) Lus10008174 [exp] 311 / 3e-103 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G214500 [exp] 444 / 1e-155 AT5G19890 422 / 4e-149 Peroxidase superfamily protein (.1) Potri.003G214700 [exp] 347 / 2e-117 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.016G058200 [exp] 345 / 6e-117 AT5G06720 428 / 2e-151 peroxidase 2 (.1) Potri.003G214800 [exp] 343 / 5e-116 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.001G011200 [exp] 332 / 9e-112 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011300 [exp] 325 / 5e-109 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.003G214900 [exp] 325 / 6e-109 AT4G08780 400 / 6e-140 Peroxidase superfamily protein (.1) Potri.001G011000 [exp] 322 / 1e-107 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G013000 [exp] 321 / 4e-107 AT3G49120 407 / 2e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G012901 [exp] 319 / 2e-106 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10025535 pacid=23144955 polypeptide=Lus10025535 locus=Lus10025535.g ID=Lus10025535.BGIv1.0 annot-version=v1.0 ATGGTCAGCATAAAGCTGAGTACTAGTACTTCATCAGCATCATTGACCATACTATTGTCGCTGCTGATGATCTCGTGTATGGCTACGAATGTCGAAGCCC AACTAAGAGCCGACTACTATGCATCAACGTGCCCGAAACTTGCACAAATCGTGCGTAGGGAAGTGATGAATGCAATCAAGGCCGAAACCCGGATGGCAGC CTCCTTGCTCCGCCTTCATTTCCACGATTGCTTTGTCAACGGATGTGACGGTTCTCTTTTGTTGGATGGGAGTGACAGTGAGAAGTTAGCGAGGCCTAAC TTGAACTCGGCCAGGGGGTTCGAAGTTGTGGACTCGATCAAAACGGCAGTGGAAAGCCAGTGCAGTGGTGTCGTATCTTGTGCTGACATTCTTGCCTTGG CTTCCCGCGATTCCGTGCTCTTGAGTGGAGGCCCGTCGTGGAAAGTGCCGCTAGGGAGAAGAGATGGGCTTGTGGCTAATCAGACTGCTGCTAATGGGCT ACCAGGCCCATTTGATAACCTAACACTCATAGTGACCAAGTTTGCAGCAGTTGGCCTTGATGATATCTCTGATGTCATCTCCTTGTCAGGTGGGCACACA ATTGGACAAGCAAAATGTGCTACGTTCAGCAACAGGCTGGTCAACTTCAGTCAAACCGGGTCCCCGGATCCGACAATGGAGTCCAACTTAGTCGCCGAAC TCCAAACCTTGTGTCCGGTGAACGGCGACGGCAACGTCACTACTGCTTTCGACAAGGGCTCCACCGACTTGTTCGACAACCACTACTTCCAGAACCTCGT CAACAACAAAGGGATTCTGACCTCCGACCAGGTGTTGTTCTCCGGCAACGAGGCCGCCACCGCAGCCGCCAGGAACCTCGTCCAGATCTACAGCGTCAAT CAGTTTCGGTTCATGGGCGACTTCGTCAAATCGATGATTCGGATGGGGAACATTGGTCCGATTACTGGGTCGGACGGTGAGATCAGGAAGAATTGTAGGG TGGTTAATTCAGATTTCGGGTTCGACAAGAACATGTACAGCGTGCTAGAGGTGAACAAGACAAGCTACGAGACATGCAACGACGCCGGATTCATTCACAA CATCACAAGAGGAGGACGTGACGTGTACAAACTGAAGCAAGCCAAGAATTACTATTTCATCTCCGGCGGAGGGTTTTGCTTCAGCGGTTTGAAAGTCGCC ATCCACGTTGAGAAGCACCCTCCGGCACCTGCTCCTGCTCCGGCGAAGAACTTTGCTCCGTCGCCGATTTCCACTGCCCATTTGGCTTTTGCTCTTGTTG CAGCTCTCGCCACTGGCCTCTCAACATTGGTTCTCTAA
AA sequence Show only first row Show all	>Lus10025535 pacid=23144955 polypeptide=Lus10025535 locus=Lus10025535.g ID=Lus10025535.BGIv1.0 annot-version=v1.0 MVSIKLSTSTSSASLTILLSLLMISCMATNVEAQLRADYYASTCPKLAQIVRREVMNAIKAETRMAASLLRLHFHDCFVNGCDGSLLLDGSDSEKLARPN LNSARGFEVVDSIKTAVESQCSGVVSCADILALASRDSVLLSGGPSWKVPLGRRDGLVANQTAANGLPGPFDNLTLIVTKFAAVGLDDISDVISLSGGHT IGQAKCATFSNRLVNFSQTGSPDPTMESNLVAELQTLCPVNGDGNVTTAFDKGSTDLFDNHYFQNLVNNKGILTSDQVLFSGNEAATAAARNLVQIYSVN QFRFMGDFVKSMIRMGNIGPITGSDGEIRKNCRVVNSDFGFDKNMYSVLEVNKTSYETCNDAGFIHNITRGGRDVYKLKQAKNYYFISGGGFCFSGLKVA IHVEKHPPAPAPAPAKNFAPSPISTAHLAFALVAALATGLSTLVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19890			Peroxidase superfamily protein...		Lus10025535 [exp]	0	1
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10022015 [exp]	2.0	0.9126
AT5G36160			Tyrosine transaminase family p...		Lus10033661 [exp]	2.0	0.9270
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10024363 [exp]	3.0	0.9302
AT2G41480			Peroxidase superfamily protein...		Lus10020422 [exp]	10.6	0.9089
AT5G57260		CYP71B10	"cytochrome P450, family 71, s...		Lus10030189 [exp]	19.6	0.9108
AT4G30230			unknown protein		Lus10041416 [exp]	22.8	0.8975
AT1G01490			Heavy metal transport/detoxifi...		Lus10027523 [exp]	27.8	0.8987
AT4G27450			Aluminium induced protein with...		Lus10034883 [exp]	30.0	0.8875
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10001589 [exp]	33.7	0.8774
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10011184 [exp]	36.3	0.8559

Compare expression of checked genes

Lus10025535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.