Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27035 141 / 3e-43 AtENODL20 early nodulin-like protein 20 (.1) AT4G12880 89 / 6e-23 AtENODL19 early nodulin-like protein 19 (.1.2) AT5G15350 86 / 2e-21 AtENODL17 early nodulin-like protein 17 (.1) AT3G01070 83 / 2e-20 AtENODL16 early nodulin-like protein 16 (.1) AT2G32300 76 / 5e-17 UCC1 uclacyanin 1 (.1) AT4G27520 69 / 5e-14 AtENODL2 early nodulin-like protein 2 (.1) AT2G25060 66 / 8e-14 AtENODL14 early nodulin-like protein 14 (.1) AT3G17675 64 / 1e-13 Cupredoxin superfamily protein (.1) AT2G31050 66 / 2e-13 Cupredoxin superfamily protein (.1) AT4G32490 61 / 9e-12 AtENODL4 early nodulin-like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026749 [exp] 114 / 2e-32 AT2G27035 135 / 7e-41 early nodulin-like protein 20 (.1) Lus10005229 [exp] 108 / 4e-30 AT2G27035 124 / 7e-37 early nodulin-like protein 20 (.1) Lus10026064 [exp] 79 / 1e-18 AT5G15350 113 / 4e-32 early nodulin-like protein 17 (.1) Lus10014356 [exp] 78 / 4e-18 AT5G15350 108 / 2e-30 early nodulin-like protein 17 (.1) Lus10041570 [exp] 72 / 6e-16 AT3G27200 167 / 2e-53 Cupredoxin superfamily protein (.1) Lus10027143 [exp] 73 / 8e-16 AT2G32300 137 / 9e-40 uclacyanin 1 (.1) Lus10025535 [exp] 71 / 2e-14 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10002614 [exp] 66 / 7e-14 AT2G32300 100 / 1e-26 uclacyanin 1 (.1) Lus10022350 [exp] 66 / 1e-13 AT3G27200 169 / 7e-54 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G219800 [exp] 150 / 2e-46 AT2G27035 130 / 1e-38 early nodulin-like protein 20 (.1) Potri.001G219900 [exp] 114 / 2e-32 AT2G27035 136 / 2e-41 early nodulin-like protein 20 (.1) Potri.017G088500 [exp] 105 / 9e-29 AT2G27035 122 / 7e-36 early nodulin-like protein 20 (.1) Potri.003G183300 [exp] 84 / 3e-20 AT5G15350 123 / 1e-35 early nodulin-like protein 17 (.1) Potri.001G043600 [exp] 79 / 1e-18 AT5G15350 121 / 2e-35 early nodulin-like protein 17 (.1) Potri.017G088600 [exp] 78 / 3e-18 AT5G15350 194 / 5e-64 early nodulin-like protein 17 (.1) Potri.001G332200 [exp] 72 / 2e-16 AT3G27200 171 / 5e-55 Cupredoxin superfamily protein (.1) Potri.004G121100 [exp] 72 / 4e-16 AT5G15350 149 / 4e-46 early nodulin-like protein 17 (.1) Potri.013G030000 [exp] 71 / 8e-16 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.013G030450 [exp] 71 / 9e-16 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10025536 pacid=23145033 polypeptide=Lus10025536 locus=Lus10025536.g ID=Lus10025536.BGIv1.0 annot-version=v1.0 ATGACGATTCGGCCAACAGCGAGAGTAGCCATGTTCCTGCTGGCCATTACAGCTTTGACTGGTACACCTGAAGGCAGAGATCCAGTTCTCTACAGGGTTG GCGGTGGAAGGTACAGTTGGGTTCCAGGGACCAACTTCACTACCTGGGCGTCTCAACAGCAGTTCTACGTTGGTGACTGGCTCTACTTTGGGTTCAACAA GACGATGTACAATGTGCTGGAGGTGAACAAGAGGAGCTACGACCAATGCAGAGGAGACAACTTCATCGCCAACATCACTAGAGGAGGCCGCGACGTGTTC AATCTCACCGAGCCAATGCCCTACTACTTCATATGCAGCCGCTCTACACACTGCTCCCTCCAGGGTATGAAGGTTGAAGTTCTAGTCACTGATCCGACAG TGCCTCTCCAGGCTATGACCAGCAGCAGCTCTTCTCCTCCATGTCCAACCACCACAACTATTTCAGCAGCAGTCATCTTATTCCTGTGTTCGTTCCAAGT GTTGCATTTACTAAGCTACAGGTTTTGA
AA sequence Show only first row Show all	>Lus10025536 pacid=23145033 polypeptide=Lus10025536 locus=Lus10025536.g ID=Lus10025536.BGIv1.0 annot-version=v1.0 MTIRPTARVAMFLLAITALTGTPEGRDPVLYRVGGGRYSWVPGTNFTTWASQQQFYVGDWLYFGFNKTMYNVLEVNKRSYDQCRGDNFIANITRGGRDVF NLTEPMPYYFICSRSTHCSLQGMKVEVLVTDPTVPLQAMTSSSSSPPCPTTTTISAAVILFLCSFQVLHLLSYRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10025536 [exp]	0	1
AT3G54200			Late embryogenesis abundant (L...		Lus10039665 [exp]	4.8	0.8052
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10005360 [exp]	4.9	0.6928
AT1G17930			Aminotransferase-like, plant m...		Lus10004830 [exp]	7.5	0.7032
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10035001 [exp]	8.4	0.6629
					Lus10005203 [exp]	9.8	0.6185
AT5G15110			Pectate lyase family protein (...		Lus10033018 [exp]	11.5	0.6883
AT3G18180			Glycosyltransferase family 61 ...		Lus10032457 [exp]	11.8	0.6871
AT5G53820			Late embryogenesis abundant pr...		Lus10003056 [exp]	23.7	0.6231
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Lus10012241 [exp]	29.0	0.6354
AT1G17930			Aminotransferase-like, plant m...		Lus10005495 [exp]	29.4	0.6164

Compare expression of checked genes

Lus10025536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.