Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21105 744 / 0 Plant L-ascorbate oxidase (.1.2.3) AT5G21100 682 / 0 Plant L-ascorbate oxidase (.1) AT3G04600 659 / 0 Nucleotidylyl transferase superfamily protein (.1.2.3) AT4G39830 545 / 0 Cupredoxin superfamily protein (.1) AT5G05390 206 / 1e-56 LAC12 laccase 12 (.1) AT2G29130 204 / 5e-56 LAC2, ATLAC2 laccase 2 (.1) AT5G03260 202 / 2e-55 LAC11 laccase 11 (.1) AT2G30210 202 / 3e-55 LAC3 laccase 3 (.1) AT2G46570 199 / 4e-54 LAC6 laccase 6 (.1) AT5G48100 196 / 3e-53 LAC15, TT10, ATLAC15 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026753 [exp] 1103 / 0 AT5G21105 787 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10026754 [exp] 737 / 0 AT3G04600 692 / 0.0 Nucleotidylyl transferase superfamily protein (.1.2.3) Lus10000871 [exp] 559 / 0 AT4G39830 756 / 0.0 Cupredoxin superfamily protein (.1) Lus10009603 [exp] 557 / 0 AT4G39830 754 / 0.0 Cupredoxin superfamily protein (.1) Lus10022504 [exp] 551 / 0 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Lus10016808 [exp] 550 / 0 AT4G39830 824 / 0.0 Cupredoxin superfamily protein (.1) Lus10017122 [exp] 504 / 6e-170 AT3G04600 471 / 9e-166 Nucleotidylyl transferase superfamily protein (.1.2.3) Lus10034614 [exp] 212 / 1e-58 AT5G60020 934 / 0.0 laccase 17 (.1) Lus10017427 [exp] 207 / 4e-57 AT2G40370 894 / 0.0 laccase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G219300 [exp] 837 / 0 AT5G21105 758 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.009G159700 [exp] 836 / 0 AT5G21105 760 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.009G159300 [exp] 673 / 0 AT3G04600 692 / 0.0 Nucleotidylyl transferase superfamily protein (.1.2.3) Potri.010G171700 [exp] 572 / 0 AT4G39830 799 / 0.0 Cupredoxin superfamily protein (.1) Potri.007G088358 [exp] 547 / 0 AT4G39830 831 / 0.0 Cupredoxin superfamily protein (.1) Potri.007G088222 [exp] 542 / 0 AT4G39830 847 / 0.0 Cupredoxin superfamily protein (.1) Potri.005G079400 [exp] 536 / 8e-180 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Potri.001G454700 [exp] 505 / 3e-168 AT4G39830 619 / 0.0 Cupredoxin superfamily protein (.1) Potri.007G088290 [exp] 247 / 8e-75 AT4G39830 363 / 1e-123 Cupredoxin superfamily protein (.1) Potri.016G112000 [exp] 219 / 2e-61 AT2G38080 911 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00579 [flax] [poplar] tRNA-synt_1b tRNA synthetases class I (W and Y) CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10025538 pacid=23145000 polypeptide=Lus10025538 locus=Lus10025538.g ID=Lus10025538.BGIv1.0 annot-version=v1.0 ATGGGCCGGCGGGTTCATGTGTTGATGATGGTAATGTGTCTTGCCGCCGTCCAAAGTTGCTGGGGCAAGACTAGGCATTTCAAGTGGGACGTGGAGTACA TGTTCTGGTCGCCGGACGGCCAGGAGCATACCGTCATGGGTATCAACGGCCAGTTTCCGGGGCCGACGATCAGGGCCAAGGCCGGCGACATAATCCACGT GGACCTCACCAACAAGCTACATACTGAGGGAGTTGTTATTCACTGGCATGGTATCAGACAGCAAGGGACTCCATGGGCTGATGGAACAGCTGCAATCTCA CAGTGTGCCATTGCTCCTGGTGAAACTTTCCCTTACAGGTTCACTGTTGACAAGGCGGGTACATATTTCTACCATGGGCATTACGGGATGCAAAGATCAG CGGGGCTATACGGTTCACTCATAGTTGAAGCAGGAGACAAAGTTGGAGAGAAAGATCCATTCCACTATGACAGCGAGTTCAACCTCCTGCTCAGCGACTG GTGGCACAAAAGTGTCCACGAACAAGAAGTTGGCCTCTCTTCCCTCCCCTTCCGCTGGATCAACGAACCCAACACTTTGTTAATTAACGGGAGAGGCCAG TACAACTGTTCACTGGCAGCAAAGTATAACAAGACATCAGCATCATTACCACAGTGTAAGCTAAGAGGGACTGAGCAATGGGCACCAAATGTGCTCAAAG TGCTACCAAACAAGACTTACAGGCTCAGAATTGCCAGCACCACTGCCTTGGCTTCTCTCAACTTAGCCATTGGAGGCCACAAGATGGTGGTGGTGGAAGC CGACGGGAACCACGTCCAACCATTTTCGACGGACGATATCGACATCTACTCCGGCGAGAGTTACTCGGTCCTCTTCACAACGAACCAAAACCCGTCAAAC AACTACTGGATCTCCGTTGGAGTCCGCGGCCGCCGCCCTCAAACCCCACAAGCATTAGTCCTCCTCAACTACCTCCCAAACTCCGCCTCCAAATTCCCAA CCTCACCTCCTCCGATCACTCCCCGGTGGGACGATTACGCCCACTCCAAATCCTTCACAACCAAAATCCTCGCCCTAATGGGCTCCCCAAAGCCCACTCC CAAAGCTCACCGCCGGATCCAACTCCTCAATACCCAAAACCGGCTCAACGGGTTCACTAAATGGGCCATCAATAATGTCTCGTTGATTCTTCCGTCAACG CCGTACATCGGGTCCATGAAACACAATCTCAAATCGGCGTTCGACCAGACCCCACCGCCGGATAACTTCAATCAAAACTACGACGTTTCGTCCCCACCGG TGAACGCCAACACCACGACGGGGAACGGCGTGTACGTGATCGACTTTGGGACGACGGTGGATGTAATCTTGCAGAACGCGAATGCTCTGTCGGCGAATGT GAGCGAGATCCATCCTTGGCATTTGCACGGGCATGATTTCTGGGTTTTGGGTTACGGAGATGGGAAATTTGGCGACGGAAAGGGGAAAAAGTTGAATTTG AAGAATCCGCCGTTGAGGAACACGGCGGTGATTTTTCCTTACGGGTGGACGGCGTTGAGGTTTGTGGCGGATAATCCTGGGGTTTGGGCTTTCCATTGTC ATATTGAGCCGCATTTGCATATGGGGATGGGGGTTGTTTTTGCAGAGGGTGTTGATCGGATTGGGGATGTGCCTAAGGAAGCGCTTGCCTGTGGATTGAC TGCTACTAGTTTGCTTGTCTCAGGCGAAGCAGATCTCCTTGCATCAGTCAGAATTTGCAAAAACATGTACATTATCTCATTGCTGGCAATTGGGGTTTTT GCTGGTAGACTGATTCTAGTTCTTGGTGGAGGGTTTTCAACTGCAGGATTGTTAGCATACATTGTAATGGAGAAGAGGGAGGGTAAACAAGAGGAGGTGG AGGAAGAGCAGGTGGTGAATCCATGGGAAGTTTCGGCCAAAGATGGAGGGAAGATCGATTACGATAAGCTTATCGACAAATTCGGATGCCAAAGGCTTGA ACTTCCAATAGTTGACCGTGTCCAACGACTGACTGGTAGAGCGCCTCATGTCTTCCTCCGCCGTGGTGTTTTCTTTGCCCACAGGGATTTTGATGAGATA CTGAATGCATATGAGAAAGGGAAAAAGTTCTACCTTTATACTGGTAGAGGTCCATCCTCTGAAGCTTTGCATCTCGGTCATCTTGTGCCCTTCATGTTTA CCAAATATTTGCAAGATGCCTTCAAGGTGCCACTTGTGATACAACTTACTGATGATGAGAAGTGCATGTGGAAGAATCTTACAGTGGAGGAGAGCCAGAG ACTTGCCCGTGAAAATGCGAAAGACATTATTGCTTGCGGTTTCGATGTCACCAGGACATTCATCTTTTCAGATTTTGATTACGTTGGCGGTGCATTTTAC AAGAACATGGTGAGGATTGGGAAGTGTGTCACATACAATAAGGTCGTGGGCATATTCGGTTTCAGCGGTGAAGATCACATCGGAAAAGTTAGTTTTCCAC CAGTCCAGGCAGCACCATCTTTTCCTAGTTCATTTCCACACTTGTTCTCCGGAAAAGACGACCTCCGTTGCTTGATTCCTTGTGCAATTGATCAGGATCC ATACTTCAGAATGACACGAGATGTTGCACCCAGGCTAGGATATCATAAACCTTCACTGATTGAGTCATTGTTCTTCCCGGCCCTTCAGGGAGAAACTGGA AAAATGTCTGCCAGTGATCCGAATTCTGCTATATATGTGACTGATTCTGCCAAGGTCATTAAGAACAAGATAAATAAGTATGCGTTCTCTGGGGGACAAG ATTCCGTAGAGAAGCACAGAGAACTTGGGGCCAATCTCGAGGTAGATATACCAGTGAAGTACCTAAGCTTCTTCCTGGAGGACGATGCTGAGCTCGAGCA CATTAAGACGGAATATGGCGCTGGGCGAATGTTGACCGGGGAGGTAAAGAAACGTCTTGCTGATGTTTTGACAGAACTGGTAGATCGACATCGTGCAGCT CGAGCTGCTGTGACAGAAGAAATGGTGGATGCTTTCATGGCAGTGAGACCACTTCCTAATATGTTTGACTGA
AA sequence Show only first row Show all	>Lus10025538 pacid=23145000 polypeptide=Lus10025538 locus=Lus10025538.g ID=Lus10025538.BGIv1.0 annot-version=v1.0 MGRRVHVLMMVMCLAAVQSCWGKTRHFKWDVEYMFWSPDGQEHTVMGINGQFPGPTIRAKAGDIIHVDLTNKLHTEGVVIHWHGIRQQGTPWADGTAAIS QCAIAPGETFPYRFTVDKAGTYFYHGHYGMQRSAGLYGSLIVEAGDKVGEKDPFHYDSEFNLLLSDWWHKSVHEQEVGLSSLPFRWINEPNTLLINGRGQ YNCSLAAKYNKTSASLPQCKLRGTEQWAPNVLKVLPNKTYRLRIASTTALASLNLAIGGHKMVVVEADGNHVQPFSTDDIDIYSGESYSVLFTTNQNPSN NYWISVGVRGRRPQTPQALVLLNYLPNSASKFPTSPPPITPRWDDYAHSKSFTTKILALMGSPKPTPKAHRRIQLLNTQNRLNGFTKWAINNVSLILPST PYIGSMKHNLKSAFDQTPPPDNFNQNYDVSSPPVNANTTTGNGVYVIDFGTTVDVILQNANALSANVSEIHPWHLHGHDFWVLGYGDGKFGDGKGKKLNL KNPPLRNTAVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVDRIGDVPKEALACGLTATSLLVSGEADLLASVRICKNMYIISLLAIGVF AGRLILVLGGGFSTAGLLAYIVMEKREGKQEEVEEEQVVNPWEVSAKDGGKIDYDKLIDKFGCQRLELPIVDRVQRLTGRAPHVFLRRGVFFAHRDFDEI LNAYEKGKKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLTVEESQRLARENAKDIIACGFDVTRTFIFSDFDYVGGAFY KNMVRIGKCVTYNKVVGIFGFSGEDHIGKVSFPPVQAAPSFPSSFPHLFSGKDDLRCLIPCAIDQDPYFRMTRDVAPRLGYHKPSLIESLFFPALQGETG KMSASDPNSAIYVTDSAKVIKNKINKYAFSGGQDSVEKHRELGANLEVDIPVKYLSFFLEDDAELEHIKTEYGAGRMLTGEVKKRLADVLTELVDRHRAA RAAVTEEMVDAFMAVRPLPNMFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10025538 [exp]	0	1
AT2G27770			Plant protein of unknown funct...		Lus10009405 [exp]	1.4	0.8233
AT1G07710			Ankyrin repeat family protein ...		Lus10015224 [exp]	3.5	0.8203
AT5G56040			Leucine-rich receptor-like pro...		Lus10042090 [exp]	3.5	0.8230
AT2G28790			Pathogenesis-related thaumatin...		Lus10016572 [exp]	3.9	0.8140
AT4G39840			unknown protein		Lus10041688 [exp]	8.7	0.8255
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10035859 [exp]	11.0	0.7890
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10041041 [exp]	13.3	0.7534
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10015477 [exp]	13.4	0.7588
AT1G07710			Ankyrin repeat family protein ...		Lus10005432 [exp]	15.5	0.7610
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10003220 [exp]	15.9	0.7320

Compare expression of checked genes

Lus10025538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.