Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05910 1452 / 0 cell division cycle protein 48-related / CDC48-related (.1) AT3G15120 286 / 1e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G03340 230 / 9e-63 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 229 / 2e-62 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G53230 228 / 7e-62 ATPase, AAA-type, CDC48 protein (.1) AT5G19990 181 / 3e-49 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 180 / 5e-49 RPT6A AAA-type ATPase family protein (.1) AT2G20140 180 / 1e-48 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT4G29040 180 / 1e-48 RPT2A regulatory particle AAA-ATPase 2A (.1) AT1G53750 178 / 3e-48 RPT1A regulatory particle triple-A 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027038 [exp] 2173 / 0 AT1G05910 1546 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Lus10013677 [exp] 298 / 2e-82 AT3G15120 1474 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017935 [exp] 266 / 2e-72 AT3G15120 1385 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021442 [exp] 231 / 5e-63 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 231 / 6e-63 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 229 / 2e-62 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 228 / 4e-62 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 227 / 1e-61 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 193 / 4e-52 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G030900 [exp] 1670 / 0 AT1G05910 1494 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Potri.007G127900 [exp] 1566 / 0 AT1G05910 1351 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Potri.017G031400 [exp] 347 / 3e-110 AT1G05910 328 / 6e-104 cell division cycle protein 48-related / CDC48-related (.1) Potri.011G141400 [exp] 295 / 1e-81 AT3G15120 1478 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G080600 [exp] 234 / 6e-64 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 231 / 2e-63 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 230 / 1e-62 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 229 / 1e-62 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 228 / 3e-62 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.001G161700 [exp] 180 / 9e-49 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10025576 pacid=23145118 polypeptide=Lus10025576 locus=Lus10025576.g ID=Lus10025576.BGIv1.0 annot-version=v1.0 ATGTACCCAACACGTGCTGGTCCAGAAGATGGACCTGTTGCAAGGCCAGTACGTACTAGTGACAGACCAAGGAGGAGACCAAAAACATATGGTCGCTCGT ACTTTTATTACCCTACAAGCGGTGTTCGAACCAAGAAAAAGACCAAGGTTAGAGCTGCAGCTTCTCGGATTGCAAAGATGCTACGACCTGGAAACCGACC AGCTCGGACCACAAATGCTTCTGTAAGGGATAAACAGTTGGTCACCACTAATCTTCGGCGTTCTACCAGGAAGAGAAGGATTTCTGTCAACCTTGAAGAT TATGCCCACTCTTCTGGATCAGAAGATGACGACATCATGAAACCACGGTCTGTTAGACCCTTGAGGAACAAAGTTTTCAATAGTCACAATGACTTATCAC CCCCAAAACAAAAGAAGACTGATGGGACCAAATTGACACCCAGGCGTGAAGGATTGCGCCCTCGTCGTTTAAAATCTGGTGCAAGAAAACAACTAAACAT GGACTCAGGCGATGACCAGGAAAGTTCTGATGCCAAGGTGCTACAAGATGAGACTGAGAATGGCAATGATATTGATGAAAATGATGCAGATGATGGGCAG GACGAAGATGAACCTGAGGATGAAGGTGATGGAGATGGTGGGGATGAACGAGAAGAAGACGGCGATGACGAGGATGGTGAAGAAGAACAAGATGGAAGAC GGAGGTATGATCTTCGAAATCGTACAGATGTTAGAAGACTTTCTGTGGATAAACAAAGACAAAGATCCCCTAGAAGGATATTGCATCAAGGACTAGGGAG CAAAGTCAATAGGGATATGAGAAAGGGTGGATCGCGGGTACACAAGCACCATCGTTCGATAAGGGGTGACGATTCTGATGATTCTCTTCTTGTAGATGAG ATGGACCAGGGTCCTGCTATTCCTTGGGCTCGAGGTGGGGCCAGATCTGGAGCTCCTTGGCTCTTTGGGGGACTAGATATGCATGGAACAACAGCATGGG GGTTGAATGCTGCTGCATCTGGCTGGGGTCATCAGGGTGACAATTTGGCTACAACTGCAGGGGCACAAACTGCTGGTCCAAGTTCTAAGGGAGGTGCAGA TATCCAGCCCATACAGGTTGATGAGAGTGTGAGTTTTGAAGATATAGGTGGGCTCTCTGAGTATATTGATGCTCTGAAGGAAATGGTTTTCTTTCCATTG TTATATCCAGATTTCTTTGCGACCTATCACATCACCCCACCTAGGGGTGTTTTGCTATGCGGTCCTCCTGGCACTGGGAAAACCTTGATTGCTCGGGCTT TAGCTTGTTCTGCTTCCAAAGCTGGCCAAAAGGTTAGTTTTTATATGCGTAAAGGCGCCGATGTACTCAGTAAGTGGGTCGGGGAGGCTGAGAGGCAGTT AAAACTTCTTTTTGAAGAAGCTCAAAGGAATCAACCTTCAATAATCTTCTTTGATGAAATAGATGGCCTTGCACCTGTTAGATCTAGCAAACAAGAGCAG ATACACAATTCTATTGTTTCGACTTTGCTGGCTTTGATGGATGGTCTGGATTCTCGTGGGCAAGTTGTTTTGATAGGAGCAACAAACCGAGTTGATGCTA TTGATGGAGCCTTACGTCGACCTGGTCGATTTGATCGGGAATTTAATTTTCCATTGCCTGGTTGCGAGGCACGTGCAGAGATACTAAACATTCATACTCG CAAATGGAAGCAGCCCCCTTCAACTGAACTGAAGTCAGAACTTGCAGCTAGTTGTGTTGGTTATTGTGGAGCTGATTTAAAAGCACTATGCACTGAAGCT GCCATCCGTGCTTTTCGTGAAAAATATCCTCAAGTTTATACAAGTGATGATAAGTTTCTGATTGATGTTGAGTCAATCAAGGTGGAAAAGTATCATTTCG TAGAAGCCATGTCCACCATTACTCCTGCTGCTCACAGAGGTGCTCTTGTACACTCTAGACCGTTATCTTTAGTAGTTACTCCATGTCTGCATAGACACCT TCAGAAAGTTATGAGCTGTATATCCGATATATTCCCTCCCCTCACCGTGTCATCAGAGTTCACTAAACTTTCTATGCTTTCTTATGGCTCTGCGATTGCT CTGGTCTATAGGCCTCGGCTTCTGCTCTGTGGCAGTGAAGGTTCTGGGCTGGATCACCTTGGACCTGCAATTTTACATGAACTGGAGAAGTTCCCTGTTC ATTCTCTTGGGCTGCCTTCTCTACTTTCAGATCCCAGTGCTAAGACACCAGAGGAAGCATTGGTGCATATTTTTGGTGAAGCAAGAAGAACTACACCGTC GATCCTCTATATACCACATTTTCACCTTTGGTGGGAAAATGCACACGAACAGCTGAGGGCTGTTCTACAAACACTATTAGAAGAATTGCAATCTGACTTA CCTATACTGTTACTTGGGACATCTTCTGTATCTCCTCCCGAGATTGATGGAAATCCATATTCAGTTTTTCCTCACCGCTCGATACATCAAGTAGATGGTC CATCAACTGAGGATAGATCCTTGTTTTTCGGACAATTGATTGAAGCTGCTTTATCAGTCATGCTGGAGGGCTTTTCTAAGGAATCCGGAGAATCTAAGTC TTCTGAGCTTCCCAAGGCTCCAAAAGTGGAAAGTGGCCCAAAGGCTTCTGAGTTGAAAGCAAAGTTAGAATCTGAGCAGCACGCACTTCGCAGAATGCGA ATGTGCCTAAGAGATGTTTGCAATCGGATATTATATGATAAAAGGTTTAATGCCTTCCACTTTCCAGTCACAGATGAGGATGCTCCAAATTACCGGACGA TAATCCAAAACCCTATGGACACCGCAACTCTTCTTCAGAGAGTTGACTCTGGTCAATACATTACATGTTCAGCTTTCCTGCAAGATATCAACCTCATTGT AACAAATGCAAAGGTTTACAATGGAGATGATTACAATGGTGCCAGGATAGTTAGCAGAGCGTACGAGCTTCGGGATGCTGTGCACGGGATGCTGGCTCAG ATGGATCCTGCGCTTGTCGCGTACTGTGACAAGATTGCAGAGCAAGGGGGTCCAATGCCTGTGCCGGATGATTTAGGAGGAACCATATTTCCATCTACAC CAGTTGTCCAGCTAGGTACAGTGACCAGAACCAGTGCTCGCCTTCGGAATGTGCAGCCAGAAGTTGATCTGGATCGGAGCTACGAGGCTTTGAAGAGGCC AAGAAAAACCGTTGATGCAGCCACTACTGCTTCCCAGCCAAGTGAAGATAGACTGCGGCAGCAAGATCAAATTCAGGCTGCAAAATCACCTGAAGAAGCC GAAATGGCAGTGGATATGAACCCAGGAAAGCCAGATACCCCTCCTCAGGCTGCTGCTGATGCTGCAGCCACCACCATTGATGTAGATCAGCAAGAAAGCT CCGGTGCTGTAACGCGAGAAGATGTGAGAATGTCGGATGCAGAAATTTCGAACGAAGCGGAACGAGTAAAGGAGCTATTCGTGGAGCGTACCTCGAGTTA CGGGATCCCGCAGCTGGAGAGGCTATACACGAGAATAATGAAGGAGGTTTTCGCGACGAAGGTGGCGGATAAAAGAGATGGTGAAGATGGTAGGAGGTTG ATTTTGAAGTGTTTGTTAAAGTATGGCGAGGATGAGCATAATTTTCTTATGGACTGA
AA sequence Show only first row Show all	>Lus10025576 pacid=23145118 polypeptide=Lus10025576 locus=Lus10025576.g ID=Lus10025576.BGIv1.0 annot-version=v1.0 MYPTRAGPEDGPVARPVRTSDRPRRRPKTYGRSYFYYPTSGVRTKKKTKVRAAASRIAKMLRPGNRPARTTNASVRDKQLVTTNLRRSTRKRRISVNLED YAHSSGSEDDDIMKPRSVRPLRNKVFNSHNDLSPPKQKKTDGTKLTPRREGLRPRRLKSGARKQLNMDSGDDQESSDAKVLQDETENGNDIDENDADDGQ DEDEPEDEGDGDGGDEREEDGDDEDGEEEQDGRRRYDLRNRTDVRRLSVDKQRQRSPRRILHQGLGSKVNRDMRKGGSRVHKHHRSIRGDDSDDSLLVDE MDQGPAIPWARGGARSGAPWLFGGLDMHGTTAWGLNAAASGWGHQGDNLATTAGAQTAGPSSKGGADIQPIQVDESVSFEDIGGLSEYIDALKEMVFFPL LYPDFFATYHITPPRGVLLCGPPGTGKTLIARALACSASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQ IHNSIVSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILNIHTRKWKQPPSTELKSELAASCVGYCGADLKALCTEA AIRAFREKYPQVYTSDDKFLIDVESIKVEKYHFVEAMSTITPAAHRGALVHSRPLSLVVTPCLHRHLQKVMSCISDIFPPLTVSSEFTKLSMLSYGSAIA LVYRPRLLLCGSEGSGLDHLGPAILHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYIPHFHLWWENAHEQLRAVLQTLLEELQSDL PILLLGTSSVSPPEIDGNPYSVFPHRSIHQVDGPSTEDRSLFFGQLIEAALSVMLEGFSKESGESKSSELPKAPKVESGPKASELKAKLESEQHALRRMR MCLRDVCNRILYDKRFNAFHFPVTDEDAPNYRTIIQNPMDTATLLQRVDSGQYITCSAFLQDINLIVTNAKVYNGDDYNGARIVSRAYELRDAVHGMLAQ MDPALVAYCDKIAEQGGPMPVPDDLGGTIFPSTPVVQLGTVTRTSARLRNVQPEVDLDRSYEALKRPRKTVDAATTASQPSEDRLRQQDQIQAAKSPEEA EMAVDMNPGKPDTPPQAAADAAATTIDVDQQESSGAVTREDVRMSDAEISNEAERVKELFVERTSSYGIPQLERLYTRIMKEVFATKVADKRDGEDGRRL ILKCLLKYGEDEHNFLMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05910			cell division cycle protein 48...		Lus10025576 [exp]	0	1
AT1G05910			cell division cycle protein 48...		Lus10027038 [exp]	1.0	0.9443
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10030445 [exp]	4.2	0.8847
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10032623 [exp]	5.3	0.8668
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10011481 [exp]	7.9	0.8832
AT5G41580			RING/U-box superfamily protein...		Lus10032307 [exp]	17.5	0.8507
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10038425 [exp]	19.6	0.8582
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10005209 [exp]	20.0	0.8111
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10023119 [exp]	20.3	0.8588
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10040472 [exp]	27.7	0.8623
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10022678 [exp]	29.7	0.8173

Compare expression of checked genes

Lus10025576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.