Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32300 101 / 4e-26 UCC1 uclacyanin 1 (.1) AT3G60270 99 / 6e-26 Cupredoxin superfamily protein (.1) AT1G72230 95 / 1e-24 Cupredoxin superfamily protein (.1) AT3G60280 94 / 8e-24 UCC3 uclacyanin 3 (.1) AT3G27200 91 / 4e-23 Cupredoxin superfamily protein (.1) AT2G44790 91 / 6e-23 UCC2 uclacyanin 2 (.1) AT2G26720 86 / 7e-21 Cupredoxin superfamily protein (.1) AT2G31050 85 / 2e-20 Cupredoxin superfamily protein (.1) AT1G22480 83 / 5e-20 Cupredoxin superfamily protein (.1) AT5G07475 82 / 3e-19 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027043 [exp] 246 / 2e-83 AT1G72230 112 / 4e-31 Cupredoxin superfamily protein (.1) Lus10008720 [exp] 111 / 9e-31 AT1G72230 140 / 2e-42 Cupredoxin superfamily protein (.1) Lus10020944 [exp] 111 / 1e-30 AT1G72230 141 / 1e-42 Cupredoxin superfamily protein (.1) Lus10027143 [exp] 109 / 9e-30 AT2G32300 137 / 9e-40 uclacyanin 1 (.1) Lus10007026 [exp] 88 / 7e-22 AT2G32300 96 / 4e-25 uclacyanin 1 (.1) Lus10041570 [exp] 87 / 2e-21 AT3G27200 167 / 2e-53 Cupredoxin superfamily protein (.1) Lus10007028 [exp] 87 / 2e-21 AT5G26330 92 / 8e-24 Cupredoxin superfamily protein (.1) Lus10022350 [exp] 86 / 3e-21 AT3G27200 169 / 7e-54 Cupredoxin superfamily protein (.1) Lus10006680 [exp] 84 / 3e-20 AT5G26330 98 / 6e-26 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G101300 [exp] 114 / 7e-32 AT1G72230 131 / 6e-39 Cupredoxin superfamily protein (.1) Potri.002G101200 [exp] 112 / 1e-30 AT1G72230 129 / 2e-37 Cupredoxin superfamily protein (.1) Potri.014G049600 [exp] 108 / 8e-30 AT3G60270 111 / 8e-31 Cupredoxin superfamily protein (.1) Potri.007G120200 [exp] 93 / 4e-23 AT2G32300 118 / 3e-32 uclacyanin 1 (.1) Potri.003G047300 [exp] 90 / 3e-22 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1) Potri.001G080700 [exp] 89 / 3e-22 AT5G07475 164 / 1e-51 Cupredoxin superfamily protein (.1) Potri.001G332200 [exp] 88 / 7e-22 AT3G27200 171 / 5e-55 Cupredoxin superfamily protein (.1) Potri.003G150300 [exp] 86 / 6e-21 AT5G07475 178 / 2e-57 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 83 / 4e-20 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.006G259000 [exp] 80 / 8e-19 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10025580 pacid=23145073 polypeptide=Lus10025580 locus=Lus10025580.g ID=Lus10025580.BGIv1.0 annot-version=v1.0 ATGGCCATCATCGCCGCTCTCGTCATCCTCCTCGTCGCCGCTCCGGCTGCCCGCGCTGCTGACATCGTCATCGGTGGTTCCAACGGGTGGACTAATTTCG GCGTCGACTACGACACATGGTCTGCCGGTCAGAAATTTAAAGTTGGCGATAATGCTGTGTTCAACTACGGCGGAAGCCACAGCGTGGCAGAAGTGTCAAG TAGCGATTACAATAGCTGCGACGCCAGCAACGCCATCCAGACCCACAACGACGGAGCCACCAAAATCCCTCTAACCACCGCCGGCACTAAGTACTTCATC TGCACTGCCGCCGGCCACTGCAGCAGCGGCATGAAGGTGACAATTAAAGTCGATGCGGCCAGCAGCGGTGGGTCCCCCAGCACCCCAACTCCCACTACTC CATCGGGATCAGGATCAGGATCCGGGTCCACCACGCCGTCCGATTCTGAGCCTTCTACCCCAGCATCCAGCTCCGGCGGGTCGAACAAGAAGGAGCCATC TTATAACACCGGTGCCGCCACTTCCTCCGTCCTCTACAACGTGGTGTTTGGTTCAGCTGCAGTGATTGGAACCACCATGGTTGCACTTTTGGGCTAG
AA sequence Show only first row Show all	>Lus10025580 pacid=23145073 polypeptide=Lus10025580 locus=Lus10025580.g ID=Lus10025580.BGIv1.0 annot-version=v1.0 MAIIAALVILLVAAPAARAADIVIGGSNGWTNFGVDYDTWSAGQKFKVGDNAVFNYGGSHSVAEVSSSDYNSCDASNAIQTHNDGATKIPLTTAGTKYFI CTAAGHCSSGMKVTIKVDAASSGGSPSTPTPTTPSGSGSGSGSTTPSDSEPSTPASSSGGSNKKEPSYNTGAATSSVLYNVVFGSAAVIGTTMVALLG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72230			Cupredoxin superfamily protein...		Lus10025580 [exp]	0	1
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Lus10038426 [exp]	1.4	0.9592
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10043449 [exp]	2.0	0.9517
					Lus10005397 [exp]	3.2	0.9430
AT4G30170			Peroxidase family protein (.1)		Lus10001442 [exp]	4.6	0.9502
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001869 [exp]	6.9	0.9449
AT5G09360		LAC14	laccase 14 (.1)		Lus10041066 [exp]	6.9	0.8982
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10023615 [exp]	6.9	0.9330
					Lus10019690 [exp]	9.9	0.9072
AT1G72230			Cupredoxin superfamily protein...		Lus10027043 [exp]	10.4	0.9311
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10024246 [exp]	11.7	0.9377

Compare expression of checked genes

Lus10025580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.