Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21870 562 / 0 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G77610 555 / 0 EamA-like transporter family protein (.1) AT5G05820 179 / 5e-54 Nucleotide-sugar transporter family protein (.1) AT3G11320 176 / 5e-53 Nucleotide-sugar transporter family protein (.1) AT5G04160 174 / 3e-52 Nucleotide-sugar transporter family protein (.1) AT3G10290 172 / 5e-51 Nucleotide-sugar transporter family protein (.1) AT1G12500 163 / 3e-47 Nucleotide-sugar transporter family protein (.1) AT3G17430 120 / 3e-31 Nucleotide-sugar transporter family protein (.1) AT1G48230 116 / 2e-29 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G25520 112 / 2e-28 Drug/metabolite transporter superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042700 [exp] 586 / 0 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1) Lus10029663 [exp] 519 / 0 AT1G77610 547 / 0.0 EamA-like transporter family protein (.1) Lus10018189 [exp] 458 / 1e-164 AT1G77610 417 / 1e-148 EamA-like transporter family protein (.1) Lus10016446 [exp] 182 / 4e-55 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10040234 [exp] 182 / 4e-55 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10028255 [exp] 182 / 5e-55 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10009878 [exp] 172 / 3e-51 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 164 / 7e-48 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042039 [exp] 162 / 3e-47 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G177200 [exp] 573 / 0 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.002G084500 [exp] 568 / 0 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.016G043200 [exp] 182 / 5e-55 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 177 / 2e-53 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G194100 [exp] 176 / 7e-53 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.009G040800 [exp] 174 / 2e-52 AT5G05820 472 / 2e-169 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 176 / 4e-52 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.001G247600 [exp] 174 / 4e-52 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 167 / 2e-49 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 167 / 1e-48 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10025645 pacid=23145083 polypeptide=Lus10025645 locus=Lus10025645.g ID=Lus10025645.BGIv1.0 annot-version=v1.0 ATGGAGGATAAGAGATTATTACAGTGGACGGTCTTCAGATCTCTCCTCGCCATTGTTCAGTGGTGGGGTTTCAACGTCACAGTCATCATCATGAACAAAT GGATCTTCCAGAAATTGGACTTCAAGTTCCCGCTCACTGTATCATGTGTCCACTTCATATGCTCAGCAATCGGAGCGTACATTGCAATCAAGGTGCTGAA AATCAAACCCCTCATAGTGGTTGAGTCACAGGATCGATGGCGGAGGATATTTCCCATGTCGGTCGTCTTCTGCATCAACATTGTGCTGGGCAATGTCAGT TTGCGGTACATTCCGGTCTCGTTCATGCAAACGATCAAGTCATTTACTCCTGCAACTACAGTTGTTTTGCAGTGGTTAATTTGGAGGAAATACTTCGACT GGCGCATCTGGGCTTCGTTAGTGCCTATCGTTGGAGGAATACTTCTGACGTCAGTGACGGAGCTTAGTTTCAATGTGTTTGGGTTCTCTGCGGCTCTCCT TGGCTGTTTAGCAACTTCTACGAAGACTATCCTTGCCGAATCTTTACTGCATGGCTACAAATTCGACAGTATAAATACAGTGTACTACATGGCACCTTTG GCAACCATGATCCTGGGACTACCAGCAATGCTACTGGAAGGCGACGGTGTTCTCGATTGGTTCCAAACTCACGACTCGATCAATTCTTCCCTGTTCATCA TATTCGTTTCCGGAGTTCTAGCCTTCTGCCTCAACTTCTCCATCTTTTATGTCATCCATTCAACCACCGCTGTCACCTTCAACGTCGCTGGGAACCTTAA GGTTGCAGTTGCTGTGTTGATCTCGTGGATGATATTCCGGAACCCTATCTCGGCATTGAATGCTGTGGGATGTGCCATCACCCTTGTCGGATGTACCTTC TACGGATACGTAAGGCACTTGCTCTCGCAGCCACGATCTACGGAAGGCACGATCGAGTCACTGCCACTGGTGAATGATAAATGA
AA sequence Show only first row Show all	>Lus10025645 pacid=23145083 polypeptide=Lus10025645 locus=Lus10025645.g ID=Lus10025645.BGIv1.0 annot-version=v1.0 MEDKRLLQWTVFRSLLAIVQWWGFNVTVIIMNKWIFQKLDFKFPLTVSCVHFICSAIGAYIAIKVLKIKPLIVVESQDRWRRIFPMSVVFCINIVLGNVS LRYIPVSFMQTIKSFTPATTVVLQWLIWRKYFDWRIWASLVPIVGGILLTSVTELSFNVFGFSAALLGCLATSTKTILAESLLHGYKFDSINTVYYMAPL ATMILGLPAMLLEGDGVLDWFQTHDSINSSLFIIFVSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLISWMIFRNPISALNAVGCAITLVGCTF YGYVRHLLSQPRSTEGTIESLPLVNDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21870		GONST5	golgi nucleotide sugar transpo...		Lus10025645 [exp]	0	1
AT5G45850			Protein of unknown function (D...		Lus10015280 [exp]	1.0	0.9012
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10009431 [exp]	2.0	0.8722
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10026662 [exp]	2.6	0.8678
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10015876 [exp]	3.2	0.8597
AT3G60030	SBP	SPL12	squamosa promoter-binding prot...		Lus10004523 [exp]	3.5	0.8792
AT2G45900			Phosphatidylinositol N-acetygl...		Lus10028147 [exp]	4.0	0.8829
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10018773 [exp]	4.9	0.8714
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10011477 [exp]	5.0	0.8719
AT3G07190			B-cell receptor-associated pro...		Lus10038188 [exp]	6.5	0.8529
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Lus10020770 [exp]	9.1	0.8158

Compare expression of checked genes

Lus10025645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.