Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38050 738 / 0 Xanthine/uracil permease family protein (.1) AT2G27810 548 / 0 ATNAT12 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) AT1G60030 308 / 7e-96 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT2G05760 307 / 7e-96 Xanthine/uracil permease family protein (.1) AT2G34190 301 / 1e-93 Xanthine/uracil permease family protein (.1) AT5G49990 283 / 2e-86 Xanthine/uracil permease family protein (.1) AT5G62890 282 / 3e-86 Xanthine/uracil permease family protein (.1.2.3.4) AT1G10540 272 / 2e-82 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT2G26510 257 / 1e-76 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT1G49960 254 / 6e-76 Xanthine/uracil permease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035946 [exp] 1275 / 0 AT4G38050 825 / 0.0 Xanthine/uracil permease family protein (.1) Lus10009401 [exp] 530 / 0 AT2G27810 888 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Lus10020551 [exp] 523 / 6e-178 AT2G27810 891 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Lus10030014 [exp] 292 / 3e-90 AT2G05760 927 / 0.0 Xanthine/uracil permease family protein (.1) Lus10004228 [exp] 285 / 3e-87 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 284 / 6e-87 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10010707 [exp] 284 / 7e-87 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029238 [exp] 283 / 2e-86 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1) Lus10042138 [exp] 274 / 1e-82 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011400 [exp] 847 / 0 AT4G38050 834 / 0.0 Xanthine/uracil permease family protein (.1) Potri.009G148600 [exp] 577 / 0 AT2G27810 900 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Potri.004G187900 [exp] 565 / 0 AT2G27810 880 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Potri.014G157800 [exp] 301 / 9e-94 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.012G077400 [exp] 291 / 1e-89 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.015G072600 [exp] 290 / 3e-89 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.011G068200 [exp] 289 / 4e-89 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 286 / 4e-88 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.008G146400 [exp] 287 / 5e-88 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.010G095500 [exp] 286 / 6e-88 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00860 [flax] [poplar] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Lus10025716 pacid=23177528 polypeptide=Lus10025716 locus=Lus10025716.g ID=Lus10025716.BGIv1.0 annot-version=v1.0 ATGGAGACTGGGTCGACCTCCGATTCCCGTGCTAAGCCTGATAAGGGAAGACCAAGCAGCAGAGGCAGCAAGGCTAAGAAGCTATTCGGCTCCATGATGT CCAATATCGAGCCTTACATCCCTAACTCCGACCACAATCCAAATCACTTGAGATCTTGGGCTAAGAAAACCGGCTTCGTATCTACTACTTTCTCCACTGA ATCCACTACAGCAAGTAACAGCAGCACTGGTTTTGACCCCGGGAGGAGACCCCCTGCTGCTACTACTGACCCCCGCGGGTCCACTTCTCAAACCGACCCA ATTCTGGGCAGGACCCGAGGGGCTGAGATTCAACAGGATGAGAGGACTCCCATGGGTGGGCTTAGAGGTGAAAATAAGAAGAGGAGAGTTGGGAATGAGT TAGTTTTGGGCGATAAAGAAGAGGAAGGAAGCAATGTAGCAGATGGAAATGCCAATCACATTAATGCTTCCCGTGATGGAGTCTCTATAGCCATTCCTGT AGAACAGAAGAAAGATGAAGAAGAATCTATCGAAAGGGAGTTGGGAATGGACATGTATCCTGGAGGCGGTGGCGAGGGTGGAGGATTGCAGAGGCACGAT GGTGTTAGAATTGGCTTCAGAGATAACCCTGGCCTTGTTCAACTTTTGTATTATAGCTTGCAGCACTATCTGTCTATGGCTGGTTCATTGATCTTCATTC CGATGATAATTGTACCAACTATGGGTGGTACGGATAAAGATACCGCTACTGTGATTTCCACAATGCTTATGGTTTCTGGAGTTACTACGATATTACATTC CTATTTTGGTACCCGGCTTCCATTAGTTCAAGGGAGCTCATTTGTCTATTTGGCACCGGCACTAGTCATCATGAATGCTCAGGAATACCGGAATCTCACA GAAAATAAATTCAGACACATTATGAGGGAACTTCAAGGGGCAATTATTGTTGGTTCAGTATTCCAGAGCCTCTTGGGATTCACTGGCCTAATGTCTCTTC TATTGAGATTAATCAATCCAGTGGTAGTGGCTCCAACAGTAGCTGCAGTTGGTTTAGCATTTTTTAGCTATGGTTTCCCACAAGCCGGAAGTTGTGTGGA AATTAGCATCCCTCTTATTGTGTTAGTTCTAATATTCACCTTGTATCTACGCGGAATATCTATCTTTGGACACCGATTATTCAGAATTTATGCTGTTCCA GTGAGCGTGATAATTATATGGATATATGCATTCTTTTTGACAGCTGGAGGAGCTTACAATTATAAGGGTTGCAACACTGGTATTCCCAGTTCAAACATCC TAGTGGATGCATGCAGGAAACATGCATATACAATGCAGCACTGCAGGACTGATGTTTCCAGTGCGTGGAGGACTGCTGCATGGGTCAGGATTCCCTACCC ATTTCAGTGGGGTGCTCCAATCTTCAATATAAGGACTTCCTTGATCATGATAGTTGTATCATTGGTGGCGTCGGTTGATTCGGTTGGAATATACCACTCC ACATCCTTACTGGTTAGTTCAAAGCCTCCAACTCCGGGAATTGTCAGCAGAGGACTTGCATTGGAGGGTCTATGCAGTATATTGGCTGGACTTTGGGGTT GCGGTACTGGTTCGACAACCTTAACTGAAAACATCCACACTATCAACGTCACAAAGGTTGCCAATCGAGGGACAGTGGTCCTTGGTGCAGTTCTCCTGAT CTTCTTCTCACTTTTTGGAAAAGTGGGAGCCATTCTTGCTTCTATACCACTGGCCTTGGCTGCTGCCATACTGTGCTTTATTTGGGGGCTTATTGCTGCG TTAGGTCTCTCAACTCTGCAGTACTCACAAACTGCAAGTTTTAGAAACATAGCAATTATAGGAGTTTCATTGTTCCTTGGAATGTCGGTTCCCGCTTATT TCCAGCAGTACGAGCCAAAATCCAGCCTGATACTGCCGAGCTACTTAATTCCGTATGCAGCAGCTTCAGATGGACCAGTCAACACTGGCAGTAAGCAACT CGATTTTGCAATGAATGCACTCATGTCCATGAACATGGTGGTGACATTATTGATTGCATTTGTACTTGACAACACTGTCCCTGGTAGCCGGCAAGAAAGA GGGGTATATATCTGGTCTTGCCCACAGGACTTCGCTGACGATCCATCTCTGCGGGAAGATTACTCGCTGCCCAATAAAGTTGACCGCTTCTTCTGCTGGG CAAGATGCCTCCGTGCATGA
AA sequence Show only first row Show all	>Lus10025716 pacid=23177528 polypeptide=Lus10025716 locus=Lus10025716.g ID=Lus10025716.BGIv1.0 annot-version=v1.0 METGSTSDSRAKPDKGRPSSRGSKAKKLFGSMMSNIEPYIPNSDHNPNHLRSWAKKTGFVSTTFSTESTTASNSSTGFDPGRRPPAATTDPRGSTSQTDP ILGRTRGAEIQQDERTPMGGLRGENKKRRVGNELVLGDKEEEGSNVADGNANHINASRDGVSIAIPVEQKKDEEESIERELGMDMYPGGGGEGGGLQRHD GVRIGFRDNPGLVQLLYYSLQHYLSMAGSLIFIPMIIVPTMGGTDKDTATVISTMLMVSGVTTILHSYFGTRLPLVQGSSFVYLAPALVIMNAQEYRNLT ENKFRHIMRELQGAIIVGSVFQSLLGFTGLMSLLLRLINPVVVAPTVAAVGLAFFSYGFPQAGSCVEISIPLIVLVLIFTLYLRGISIFGHRLFRIYAVP VSVIIIWIYAFFLTAGGAYNYKGCNTGIPSSNILVDACRKHAYTMQHCRTDVSSAWRTAAWVRIPYPFQWGAPIFNIRTSLIMIVVSLVASVDSVGIYHS TSLLVSSKPPTPGIVSRGLALEGLCSILAGLWGCGTGSTTLTENIHTINVTKVANRGTVVLGAVLLIFFSLFGKVGAILASIPLALAAAILCFIWGLIAA LGLSTLQYSQTASFRNIAIIGVSLFLGMSVPAYFQQYEPKSSLILPSYLIPYAAASDGPVNTGSKQLDFAMNALMSMNMVVTLLIAFVLDNTVPGSRQER GVYIWSCPQDFADDPSLREDYSLPNKVDRFFCWARCLRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38050			Xanthine/uracil permease famil...		Lus10025716 [exp]	0	1
AT5G24760			GroES-like zinc-binding dehydr...		Lus10031319 [exp]	2.2	0.9184
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Lus10043092 [exp]	2.8	0.9253
AT5G41140			Myosin heavy chain-related pro...		Lus10001481 [exp]	6.7	0.9212
AT1G63300			Myosin heavy chain-related pro...		Lus10008482 [exp]	8.5	0.9226
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10036621 [exp]	8.9	0.9193
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028401 [exp]	10.1	0.8997
AT4G18490			unknown protein		Lus10021779 [exp]	10.8	0.8825
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10002876 [exp]	11.8	0.9118
AT2G21300			ATP binding microtubule motor ...		Lus10035471 [exp]	14.5	0.9139
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Lus10035838 [exp]	15.3	0.8979

Compare expression of checked genes

Lus10025716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.