Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20230 92 / 5e-23 SAG14, ATBCB SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) AT3G17675 86 / 7e-22 Cupredoxin superfamily protein (.1) AT2G25060 87 / 2e-21 AtENODL14 early nodulin-like protein 14 (.1) AT2G26720 82 / 3e-19 Cupredoxin superfamily protein (.1) AT5G26330 81 / 5e-19 Cupredoxin superfamily protein (.1) AT2G32300 79 / 1e-17 UCC1 uclacyanin 1 (.1) AT2G31050 77 / 3e-17 Cupredoxin superfamily protein (.1) AT1G72230 76 / 6e-17 Cupredoxin superfamily protein (.1) AT3G20570 75 / 2e-16 AtENODL9 early nodulin-like protein 9 (.1) AT5G07475 73 / 5e-16 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035911 [exp] 283 / 1e-97 AT5G20230 95 / 3e-24 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Lus10006657 [exp] 128 / 1e-35 AT1G45063 106 / 1e-26 copper ion binding;electron carriers (.1.2) Lus10038098 [exp] 122 / 2e-33 AT1G45063 107 / 1e-27 copper ion binding;electron carriers (.1.2) Lus10019405 [exp] 103 / 5e-26 AT1G45063 107 / 3e-27 copper ion binding;electron carriers (.1.2) Lus10010533 [exp] 92 / 3e-23 AT5G26330 174 / 1e-55 Cupredoxin superfamily protein (.1) Lus10021925 [exp] 91 / 9e-23 AT5G26330 170 / 5e-54 Cupredoxin superfamily protein (.1) Lus10041211 [exp] 90 / 4e-22 AT5G26330 167 / 6e-53 Cupredoxin superfamily protein (.1) Lus10008720 [exp] 88 / 2e-21 AT1G72230 140 / 2e-42 Cupredoxin superfamily protein (.1) Lus10002615 [exp] 86 / 4e-21 AT5G26330 96 / 9e-26 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G192100 [exp] 170 / 2e-53 AT5G20230 100 / 2e-26 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.006G067300 [exp] 124 / 2e-34 AT5G20230 97 / 2e-24 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.018G129200 [exp] 115 / 2e-31 AT2G32300 94 / 9e-23 uclacyanin 1 (.1) Potri.006G067400 [exp] 112 / 2e-31 AT5G20230 112 / 2e-31 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.018G129400 [exp] 110 / 4e-30 AT5G20230 114 / 6e-32 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.002G161300 [exp] 92 / 3e-23 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.014G049600 [exp] 92 / 5e-23 AT3G60270 111 / 8e-31 Cupredoxin superfamily protein (.1) Potri.002G101300 [exp] 89 / 4e-22 AT1G72230 131 / 6e-39 Cupredoxin superfamily protein (.1) Potri.006G259101 [exp] 88 / 7e-22 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1) Potri.006G259000 [exp] 87 / 1e-21 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10025752 pacid=23177673 polypeptide=Lus10025752 locus=Lus10025752.g ID=Lus10025752.BGIv1.0 annot-version=v1.0 ATGGCATTTTATTTGGGTAGTGCAGTCATAGTCACGTTCTTGATCATGCGGCTTGCGGCAGCTCAAACGGTTCATCTCGTCGGAGACAGCATTGGTTGGA CTGTTCCTCCAGGTGGTGCACAGGATTACGCTAACTGGGCCACCGGCAAAACTTTCGCCGTCGGTGACATTCTTGCTTTCAATTTCGGAACAAACGAGCA TGACGTGCTCCAGGTCCCCAAGGCATCATTCGACGCATGCACTTCCGCAAACGCCGTCGGCAACGTCATCACCACCGGCCCTGCCAACGTGACCCTTGAC GCTGCGGGCGAGCATTACTACATATGTACTATTGGCAGGCACTGTGCCGCAGGCCAGAAGCTCGCTATCACCGTGGTAGCCTCTTCTACCGGAGGAGGTA ATAATAATAATGCCAATCCACCGCCCGCCGGCAGTACTACTCCTCAGCTACCAAACTCCCCGCCGGTGGACACTTGCGCTCCCACTCCTTCGGCAGATCC CACTGCGGTTCCTGGTCCCAACTCACCTCTGCCGCCTACTGTTCCTGCTCCATCGTCGTCTCCGGCTTTGACGGCTCATGCTTTCCTAGCCGTTATGGCT AAAAGAAACCGCCGTTCCGCCGCATTATTGTTTGTTTCGGTTTAA
AA sequence Show only first row Show all	>Lus10025752 pacid=23177673 polypeptide=Lus10025752 locus=Lus10025752.g ID=Lus10025752.BGIv1.0 annot-version=v1.0 MAFYLGSAVIVTFLIMRLAAAQTVHLVGDSIGWTVPPGGAQDYANWATGKTFAVGDILAFNFGTNEHDVLQVPKASFDACTSANAVGNVITTGPANVTLD AAGEHYYICTIGRHCAAGQKLAITVVASSTGGGNNNNANPPPAGSTTPQLPNSPPVDTCAPTPSADPTAVPGPNSPLPPTVPAPSSSPALTAHAFLAVMA KRNRRSAALLFVSV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Lus10025752 [exp]	0	1
AT4G30410			sequence-specific DNA binding ...		Lus10015500 [exp]	1.0	0.8321
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Lus10035911 [exp]	1.7	0.7904
AT2G31420	B3		Domain of unknown function (DU...		Lus10009354 [exp]	5.7	0.7236
					Lus10014248 [exp]	9.9	0.7949
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10002397 [exp]	12.0	0.7737
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006796 [exp]	12.7	0.6721
AT3G47570			Leucine-rich repeat protein ki...		Lus10030845 [exp]	15.1	0.7793
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000071 [exp]	22.5	0.6998
AT3G53810			Concanavalin A-like lectin pro...		Lus10008597 [exp]	23.1	0.7238
AT1G69630			F-box/RNI-like superfamily pro...		Lus10023042 [exp]	26.7	0.7114

Compare expression of checked genes

Lus10025752 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.