Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15990 932 / 0 SULTR3;4 sulfate transporter 3;4 (.1) AT1G23090 762 / 0 SULTR3;3, AST91 sulfate transporter 91 (.1) AT3G51895 645 / 0 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT1G22150 605 / 0 SULTR1;3 sulfate transporter 1;3 (.1) AT1G78000 599 / 0 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT4G08620 597 / 0 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT4G02700 585 / 0 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT5G19600 524 / 2e-179 SULTR3;5 sulfate transporter 3;5 (.1) AT1G77990 483 / 2e-162 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1) AT5G10180 480 / 2e-161 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035897 [exp] 1212 / 0 AT3G15990 1014 / 0.0 sulfate transporter 3;4 (.1) Lus10025767 [exp] 854 / 0 AT3G15990 947 / 0.0 sulfate transporter 3;4 (.1) Lus10035896 [exp] 834 / 0 AT3G15990 920 / 0.0 sulfate transporter 3;4 (.1) Lus10034603 [exp] 746 / 0 AT1G23090 953 / 0.0 sulfate transporter 91 (.1) Lus10019389 [exp] 742 / 0 AT3G15990 829 / 0.0 sulfate transporter 3;4 (.1) Lus10043247 [exp] 692 / 0 AT3G15990 789 / 0.0 sulfate transporter 3;4 (.1) Lus10029616 [exp] 619 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Lus10006612 [exp] 608 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10041111 [exp] 607 / 0 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G056200 [exp] 972 / 0 AT3G15990 976 / 0.0 sulfate transporter 3;4 (.1) Potri.001G179400 [exp] 958 / 0 AT3G15990 990 / 0.0 sulfate transporter 3;4 (.1) Potri.010G111700 [exp] 797 / 0 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.008G130400 [exp] 786 / 0 AT1G23090 998 / 0.0 sulfate transporter 91 (.1) Potri.010G082700 [exp] 657 / 0 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.005G213500 [exp] 655 / 0 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 640 / 0 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 635 / 0 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.002G092500 [exp] 628 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Potri.005G167300 [exp] 619 / 0 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0502 [flax] [poplar] STAS PF01740 [flax] [poplar] STAS STAS domain CL0062 [flax] [poplar] APC PF00916 [flax] [poplar] Sulfate_transp Sulfate permease family
Representative CDS sequence Show only first row Show all	>Lus10025766 pacid=23177546 polypeptide=Lus10025766 locus=Lus10025766.g ID=Lus10025766.BGIv1.0 annot-version=v1.0 ATGGGTGTTAACTCACACCACCGACTAGAGCCATCCCCATCCCCATGTTACCTCGAAACTAGCAAACCGGCAACCACCGCCTCCGCCGCTCATCCTCCTC CGCCGCAGCAAATGCACACCGTATGCTTGCCGCCCCACAGGACCACCCTCCAGAAACTGAAGCAGAGAGTTGGGGACATCTTCTTCCCCGACGACCCTCT TCACCGTTTCAAGAACCAGACTGGGCCCCGAAAGTTTTTCCTTGCCCTTCAATTCCTTTTCCCTGTTTTCCAGTGGGGTTCTGAGTACTCCTTCCGCCTC CTCCGCTCCGACGCCGTTTCGGGGCTTACCATTGCCAGCCTCGCCATCCCTCAGGGGATCAGTTATGCAAAGCTTGCAAATTTGCCGCCAATTGTGGGGC TGTACTCAAGCTTCGTGCCGCCATTGATATACTCACTGCTGGGAAGCTCAAAGCATCTGGCAGTGGGTCCAGTGTCCATAGCATCGTTAGTAATGGGGTC GATGCTAAGCGCTGAAATCTCGCCTTCCGACGACTCAACTCTCTACTTAAAGTTGGCATTCACTTCCACCTTCTTTGCTGGCCTTTTCCAGGCTTCTCTT GGCATTCTAAGGCTGGGATTCATAATTGATTTCTTGTCGAAAGCAACACTTGTTGGGTTCACAGCGGGAGCAGCAATCATCGTCTCGCTTCAACAGCTTA AAGGGCTTCTTGGGATTGTCCATTTCACGCCAAAGATGCAGTTCACCGCTGTTATTTCCTCTGTTCTTCACAACAAAAACGAGTGGTCATGGCAGACGAT AGTGATGGGCTTCAGTTTCCTTGTGTTTCTCTTGACAGCAAGGCACATTAGCATGAAGAAACCAAAGCTTTTCTGGGTTTCTGCTGCTGCACCTTTAACA TCAGTCTTCATCTCAACCATTCTAGTGTTCTGCCTTAAATCCAAGATTCATGGAGTCTCAGTTATTGGTCATCTGCCAAAGGGTTTGAATCCGCCTTCTG CCAATATGCTCTACTTTAGTGCCTCTTATCTGGGGCTTGCTATCAAAACTGGGATTGTCACTGGTGTATTGTCTCTCACTGAAGGAATAGCGGTAGGAAG GACATTCGCTGCTCTGAGGAACTACCAAGTGGATGGGAACAAAGAAATGATGGCTATTGGTCTGATGAACATAGCTGGTTCTTGTTCTTCTTGCTACGTA ACAACAGGTTCATTCTCCAGGTCTGCAGTGAACTACAACGCAGGAGCACAAACAGCAGTGTCCAATATTATACTGGCTGCAGCTGTGCTAGTGACTCTAC TCTTTCTGATGCCATTGTTTTACTATACACCAAATGTAATCCTGGCAGCCATCATCATAACAGCTGTGATTGGACTCATCGATTACCAGGCTGCATTCCG CCTCTGGAAGGTTGACAAACTCGACTTCCTGGCTTGTCTATGCTCATTCTTTGGTGTTCTTTTCATTTCAGTTCCTCTAGGCCTTGCCATTGCAGTTGGA GTATCAGTGTTCAAAGTTCTGCTGCATGTTACGAGACCAAACACTGTAGTTCTGGGTAACCTACCTGGAACTCATATATACCAGAACATGAACAGATATA GAGAAGCATCAAGAGTTGCATCGTTCCTCATACTCGCTGTTGAATCCCCAATCTACTTTGCAAATTGTACATACCTCCAAGAAAGGATAATGAGATGCAT AAGGGAAGAAGAAGAGTGGATTAAAGCAAACAGTGGCAGCACGTTGAAATGCATAATTCTGGACATGACAGGCACTTATACATTTTCTGCCTTGATTGCC ATTTCGGTGACAGCGATTGACACAAGTGGGATTGAATTTGTAACTGAACTGAGGAAGACATTAGAGAAAAGATCCCTTCAGCTAGTGCTAGCAAATCCAG TGGGAAGTGTGATGGAAAAGCTGCATCAAGCACAAGTACTGGAAATGTTTGGGTTGAATGGGATGTACCTGACAGTGGCAGATGCTGTTTCTGATATCTC ATCCCTGTGGAAATCACAGGCTTAA
AA sequence Show only first row Show all	>Lus10025766 pacid=23177546 polypeptide=Lus10025766 locus=Lus10025766.g ID=Lus10025766.BGIv1.0 annot-version=v1.0 MGVNSHHRLEPSPSPCYLETSKPATTASAAHPPPPQQMHTVCLPPHRTTLQKLKQRVGDIFFPDDPLHRFKNQTGPRKFFLALQFLFPVFQWGSEYSFRL LRSDAVSGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLIYSLLGSSKHLAVGPVSIASLVMGSMLSAEISPSDDSTLYLKLAFTSTFFAGLFQASL GILRLGFIIDFLSKATLVGFTAGAAIIVSLQQLKGLLGIVHFTPKMQFTAVISSVLHNKNEWSWQTIVMGFSFLVFLLTARHISMKKPKLFWVSAAAPLT SVFISTILVFCLKSKIHGVSVIGHLPKGLNPPSANMLYFSASYLGLAIKTGIVTGVLSLTEGIAVGRTFAALRNYQVDGNKEMMAIGLMNIAGSCSSCYV TTGSFSRSAVNYNAGAQTAVSNIILAAAVLVTLLFLMPLFYYTPNVILAAIIITAVIGLIDYQAAFRLWKVDKLDFLACLCSFFGVLFISVPLGLAIAVG VSVFKVLLHVTRPNTVVLGNLPGTHIYQNMNRYREASRVASFLILAVESPIYFANCTYLQERIMRCIREEEEWIKANSGSTLKCIILDMTGTYTFSALIA ISVTAIDTSGIEFVTELRKTLEKRSLQLVLANPVGSVMEKLHQAQVLEMFGLNGMYLTVADAVSDISSLWKSQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10025766 [exp]	0	1
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10035897 [exp]	1.4	0.9380
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10029701 [exp]	11.9	0.8569
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Lus10029259 [exp]	13.1	0.8916
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10032728 [exp]	15.4	0.9073
AT2G37900			Major facilitator superfamily ...		Lus10024340 [exp]	15.9	0.9012
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Lus10041343 [exp]	26.8	0.8911
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10041653 [exp]	31.1	0.8811
AT5G14940			Major facilitator superfamily ...		Lus10032177 [exp]	31.3	0.8884
AT5G26330			Cupredoxin superfamily protein...		Lus10041211 [exp]	39.1	0.8862
AT3G52500			Eukaryotic aspartyl protease f...		Lus10013325 [exp]	40.5	0.8148

Compare expression of checked genes

Lus10025766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.