Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15990 893 / 0 SULTR3;4 sulfate transporter 3;4 (.1) AT1G23090 753 / 0 SULTR3;3, AST91 sulfate transporter 91 (.1) AT3G51895 683 / 0 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT4G02700 605 / 0 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT1G22150 598 / 0 SULTR1;3 sulfate transporter 1;3 (.1) AT4G08620 598 / 0 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT1G78000 580 / 0 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT5G19600 537 / 0 SULTR3;5 sulfate transporter 3;5 (.1) AT5G10180 476 / 7e-160 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) AT1G77990 471 / 3e-158 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035896 [exp] 1197 / 0 AT3G15990 920 / 0.0 sulfate transporter 3;4 (.1) Lus10035897 [exp] 912 / 0 AT3G15990 1014 / 0.0 sulfate transporter 3;4 (.1) Lus10025766 [exp] 911 / 0 AT3G15990 1012 / 0.0 sulfate transporter 3;4 (.1) Lus10034603 [exp] 755 / 0 AT1G23090 953 / 0.0 sulfate transporter 91 (.1) Lus10019389 [exp] 706 / 0 AT3G15990 829 / 0.0 sulfate transporter 3;4 (.1) Lus10043247 [exp] 678 / 0 AT3G15990 789 / 0.0 sulfate transporter 3;4 (.1) Lus10006612 [exp] 649 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10039364 [exp] 636 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10029616 [exp] 610 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G056200 [exp] 923 / 0 AT3G15990 976 / 0.0 sulfate transporter 3;4 (.1) Potri.001G179400 [exp] 912 / 0 AT3G15990 990 / 0.0 sulfate transporter 3;4 (.1) Potri.010G111700 [exp] 800 / 0 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.008G130400 [exp] 776 / 0 AT1G23090 998 / 0.0 sulfate transporter 91 (.1) Potri.005G213500 [exp] 685 / 0 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.010G082700 [exp] 684 / 0 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 679 / 0 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 660 / 0 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.002G092500 [exp] 621 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Potri.005G167300 [exp] 612 / 0 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0502 [flax] [poplar] STAS PF01740 [flax] [poplar] STAS STAS domain CL0062 [flax] [poplar] APC PF00916 [flax] [poplar] Sulfate_transp Sulfate permease family
Representative CDS sequence Show only first row Show all	>Lus10025767 pacid=23177640 polypeptide=Lus10025767 locus=Lus10025767.g ID=Lus10025767.BGIv1.0 annot-version=v1.0 ATGGTGGGAATGAGAGTTGAAGACGAAACAGGATCTCGCCCGGAAATGGCGGTGATAATAAACACAAGTGGTGATGACGAGGTGCACAGAGTTTGTCTGC CGCCCAAGAGAACGACAGCGCAGAAGCTGAAACAGAGGCTTGGAGAAATCTTCTTTCCTGATGATCCGCTTTACAGGTTCAAGAACCAGACAGTGTACAA GAAGGTGATACTGGGTCTTCAGTTCTTGGTACCTGTTTTTGAATGGGGACCTCACTACACTCTCGACCTCTTCAAGTCTGATGTCGTCTCTGGTCTCACC ATTGCCAGCCTTGCCATCCCACAGGGTATCAGCTACGCAAAGCTAGCGAAATTGCCTCCAATCATTGGCTTATATTCGAGCTTTGTGCCACCGTTGATAT ACTCAGCCCTGGGGAGCTCAAAGCATCTAGCGGTGGGACCAGTGTCGATAGCATCCTTAGTAATGGGTTCGATGCTGACCCAGGAAGTGTCTCCTACAAA TGACCCAGCGCTCTACTTGAAACTGGCATTGACGTCCACGTTCTTCGCGGGAATGTTTCAGGCTTGCCTAGGGGTGTTAAGATTAGGGTTCGTGATCGAT TTCTTGTCCAAGGCAACCCTGGTTGGTTTTACTGCCGGTGCCGCGGTGGTTGTTTCCCTTCAGCAGTTTAAAGGGCTGCTTGGAATCGTCAGCTTCACCA GCAAGATGGAGATTGTTCCTGTAGTGTCGTCTGTTTTCCAGAACAGGGATGAATGGTCAGGGCCAACAGCGATGATGGGACTCATTTTTCTGGTGATTCT TTTGTCAACAAGGCACATAAGCATGAAGAATCCGAAACTTTTCTGGGTGTCAGCAGCAGCACCATTGACGTCTGTGGTAGCTGCAACACTTGCCAGTTTC ATTTTCAGCTCTAAGCTCCATGGTGTCAAAATTATTGGTTATCTGCCAAAGGGATTGAATCCTCCTTCCCTGAGTATGTTACTCTTCAGCTCCTCTCATC TGGCACTCGCCATTAAGACTGGGCTCGTCACTGGAATCTTGTCCCTCACTGAAGGAATTGCAGTGGGGACAACGTTTGCATCACTAGGGAACTACCAAGT GGACGGAAACAAAGAAATGATGGCAGTCGGGGCAATGAACATGGTCGGATCTTGCACATCATGCTACGTGACAACCGGTTCATTCTCGAGATCAGCAGTG AACTACAACGCGGGAGCCAAAACCGCAATGTCCAACGTGGTCATGGCATCCGCAGTGCTAGTAACCCTGTTGTTCTTGATGCCACTCTTCCACTACACTC CTGAAGTGATCCTAGCTGCAATCATCATCACCGCAGTCATCGGACTAATCGACTACAAGGCCGCCAGCAAAATTTGGAAAGTGGATAAGTTGGACTTCGT GGCGTGTCTGTGTTCCTTTGTGGGAGTGATCCTCATCTCGGTTCCTACGGGACTTTCAGTGGCAGTAGGGGTGTCGATGTTCAAAGTGTTGCTACACGTC ACCAGACCCAATACTATGGTGATGGGGAACATTCCTGGGACTCAGATTTATCAGAGCCTTCATAGATACAGAGAAGCTGAGAGGGTTCCTTCCTTTCTCA TCATTTCTATAGAGTCTCCCGTCTACTTTGCCAACTGCACCTACCTCAAAGAAAGGATAATGAGGTGCATAAGAGAAGAGGAGGATAGGATAAACGCAAA GAACAAGGATGAAGGGGAGGAAGCGCCATTGAAGTACATAATATTGGACATGACAGCGGTGAGTGCCATAGACACAAGCGGGATTGAATTCGTATCGGAG TTAAGGAAGACGCTACAGAGCAGATCACTGAAGCTGGTGATGGCGAATCCAGGGGGAACTGTGATGGAGAAACTCCACATGTCGAAGGCATTGGAGCTTT TTGGATCAGATGGACTGTTTATCGCAGTTGGTGAAGCAATCTCTCACATTTGCTCCCTTTCCAAAACTCACCGTGAGGTTATATGA
AA sequence Show only first row Show all	>Lus10025767 pacid=23177640 polypeptide=Lus10025767 locus=Lus10025767.g ID=Lus10025767.BGIv1.0 annot-version=v1.0 MVGMRVEDETGSRPEMAVIINTSGDDEVHRVCLPPKRTTAQKLKQRLGEIFFPDDPLYRFKNQTVYKKVILGLQFLVPVFEWGPHYTLDLFKSDVVSGLT IASLAIPQGISYAKLAKLPPIIGLYSSFVPPLIYSALGSSKHLAVGPVSIASLVMGSMLTQEVSPTNDPALYLKLALTSTFFAGMFQACLGVLRLGFVID FLSKATLVGFTAGAAVVVSLQQFKGLLGIVSFTSKMEIVPVVSSVFQNRDEWSGPTAMMGLIFLVILLSTRHISMKNPKLFWVSAAAPLTSVVAATLASF IFSSKLHGVKIIGYLPKGLNPPSLSMLLFSSSHLALAIKTGLVTGILSLTEGIAVGTTFASLGNYQVDGNKEMMAVGAMNMVGSCTSCYVTTGSFSRSAV NYNAGAKTAMSNVVMASAVLVTLLFLMPLFHYTPEVILAAIIITAVIGLIDYKAASKIWKVDKLDFVACLCSFVGVILISVPTGLSVAVGVSMFKVLLHV TRPNTMVMGNIPGTQIYQSLHRYREAERVPSFLIISIESPVYFANCTYLKERIMRCIREEEDRINAKNKDEGEEAPLKYIILDMTAVSAIDTSGIEFVSE LRKTLQSRSLKLVMANPGGTVMEKLHMSKALELFGSDGLFIAVGEAISHICSLSKTHREVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10025767 [exp]	0	1
AT4G25950		VATG3	vacuolar ATP synthase G3 (.1)		Lus10009452 [exp]	42.7	0.4426
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10033188 [exp]	68.7	0.4239
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10018718 [exp]	73.2	0.4082
AT1G06340			Plant Tudor-like protein (.1)		Lus10039027 [exp]	73.9	0.4082
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023036 [exp]	74.5	0.4082
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10026169 [exp]	75.2	0.4082
AT2G44220			Protein of Unknown Function (D...		Lus10006862 [exp]	75.9	0.4082
AT4G26466		LRE	lorelei (.1)		Lus10011066 [exp]	79.3	0.3944
					Lus10003370 [exp]	84.7	0.4126
AT3G03470		CYP89A9	"cytochrome P450, family 87, s...		Lus10020354 [exp]	84.8	0.4091

Compare expression of checked genes

Lus10025767 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.