Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16350 225 / 3e-70 MYB Homeodomain-like superfamily protein (.1) AT5G47390 204 / 3e-62 MYB myb-like transcription factor family protein (.1) AT1G70000 144 / 2e-40 MYB myb-like transcription factor family protein (.1.2) AT5G61620 139 / 6e-38 MYB myb-like transcription factor family protein (.1) AT5G56840 133 / 9e-37 MYB myb-like transcription factor family protein (.1) AT2G38090 119 / 1e-30 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT1G49010 118 / 3e-30 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G58900 117 / 6e-30 MYB Homeodomain-like transcriptional regulator (.1) AT5G08520 111 / 8e-28 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G04760 108 / 9e-28 MYB Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038279 [exp] 551 / 0 AT3G16350 279 / 5e-91 Homeodomain-like superfamily protein (.1) Lus10037560 [exp] 359 / 1e-122 AT3G16350 303 / 8e-101 Homeodomain-like superfamily protein (.1) Lus10006826 [exp] 293 / 2e-97 AT3G16350 235 / 1e-74 Homeodomain-like superfamily protein (.1) Lus10040181 [exp] 212 / 2e-65 AT5G47390 398 / 1e-138 myb-like transcription factor family protein (.1) Lus10004384 [exp] 209 / 3e-64 AT5G47390 394 / 3e-137 myb-like transcription factor family protein (.1) Lus10013289 [exp] 146 / 6e-41 AT1G70000 235 / 5e-77 myb-like transcription factor family protein (.1.2) Lus10030813 [exp] 136 / 5e-37 AT1G70000 229 / 7e-75 myb-like transcription factor family protein (.1.2) Lus10036678 [exp] 132 / 4e-36 AT1G70000 171 / 1e-52 myb-like transcription factor family protein (.1.2) Lus10010733 [exp] 128 / 3e-34 AT1G70000 182 / 1e-56 myb-like transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G189800 [exp] 343 / 2e-116 AT3G16350 307 / 2e-102 Homeodomain-like superfamily protein (.1) Potri.003G049100 [exp] 338 / 2e-114 AT3G16350 311 / 8e-104 Homeodomain-like superfamily protein (.1) Potri.001G155300 [exp] 224 / 2e-70 AT5G47390 340 / 7e-116 myb-like transcription factor family protein (.1) Potri.003G079500 [exp] 203 / 3e-62 AT5G47390 355 / 4e-122 myb-like transcription factor family protein (.1) Potri.010G039233 [exp] 147 / 4e-41 AT1G70000 230 / 7e-75 myb-like transcription factor family protein (.1.2) Potri.008G191800 [exp] 145 / 2e-40 AT1G70000 241 / 5e-79 myb-like transcription factor family protein (.1.2) Potri.006G230500 [exp] 138 / 2e-38 AT5G56840 167 / 1e-51 myb-like transcription factor family protein (.1) Potri.001G080300 [exp] 132 / 2e-35 AT5G61620 176 / 1e-52 myb-like transcription factor family protein (.1) Potri.006G150300 [exp] 129 / 3e-34 AT5G56840 160 / 5e-48 myb-like transcription factor family protein (.1) Potri.006G097300 [exp] 124 / 1e-32 AT2G38090 355 / 2e-123 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10025822 pacid=23177594 polypeptide=Lus10025822 locus=Lus10025822.g ID=Lus10025822.BGIv1.0 annot-version=v1.0 ATGATGACTCGCCGGTGCTCGCATTGCAGCAATAACGGCCACAACTCCAGGACGTGGCCCAAGCGCTCCGCCGCTCTCAGCGGCGCCGCCGCTCTCAGCG GCGGCGCGTCGTCTTCCTCTCTATCGTCGTCGGCTGGCGTTAAGCTTTTCGGCGTCAGGCTTACCGATGGCTCCTTCATCAAGAAGAGCGCCAGTATGGG GAACTTGTCTGCTTCGCACTACCATTCCTCGTCGTCGGCAGCTGCTTCCCCGAATCACGATTCTCCCGTCTCGGATCACGTACACGATTCGGGACGCCCA GCCGACGGGTATTTATCCGACGACCCGGCCCATGGTAGTTCTTCCAGTCGACGTCGCGATAGGAAGAAAGGTGTCCCCTGGACCGAAGAGGAGCATCGTT TATTCTTAATTGGTCTACAGAAATTTGGAAAAGGAGACTGGCGTGGAATAGCTCGGAACTATGTTGTGTCTAGGACTCCTACTCAGGTAGCTAGTCATGC TCAGAAGTATTTCATTCGGCAGAGCAATGCCACTCGAAGAAAGAGACGGTCAAGCCTGTTTGACATGGTCCCAGATGTGGCTTCTGATCCACAGCCAGTC CCGGAAGATAAAGATGAAGAGTTGCCCTCTTTGCAGCAGACAAGGGAAAATGATGATTCGGAAGATACACTTCCTTCGTTAAATCTCTCCCTTAAACCAG AGTATGAGCCGATGGAAACCATGTCTGAAGAACCGGCTATGAAGGAGGAGGAGGAACCCAATGAAACTACAATGGAATCCATTGAATCAAAACCAAGCAA GTTGTTCACATCAACAGCTCCAGGGTCGATCAAATTCACGCCATATGTTCATGGATTCTTCCCGGTTCATGTTCCGGTCCCTTATACATACTGGCCTGTC GATACAGCCCCCATTGAGGAGAAGTTGATGGTTGCAGAAACATCTAAGGTATTGAGGCCAGTTGCCGTGGTTCCCAAGGAACCGGTCAACGTAGAAGAAC TCGTGGGCATCTCTCAATTGAGCCTCGGAGATAGTGCCGGTCTGAAATTAACAGTGGAGGCATCAAGGCAGTCGGCGTTTCATGCTAAGGCACAGGGAAG TGGATCTGATATAGTAGTAGGGAAGGGGAAGAAGGGCAGCAGTAACTCCATTGAAGCAGTATGA
AA sequence Show only first row Show all	>Lus10025822 pacid=23177594 polypeptide=Lus10025822 locus=Lus10025822.g ID=Lus10025822.BGIv1.0 annot-version=v1.0 MMTRRCSHCSNNGHNSRTWPKRSAALSGAAALSGGASSSSLSSSAGVKLFGVRLTDGSFIKKSASMGNLSASHYHSSSSAAASPNHDSPVSDHVHDSGRP ADGYLSDDPAHGSSSSRRRDRKKGVPWTEEEHRLFLIGLQKFGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMVPDVASDPQPV PEDKDEELPSLQQTRENDDSEDTLPSLNLSLKPEYEPMETMSEEPAMKEEEEPNETTMESIESKPSKLFTSTAPGSIKFTPYVHGFFPVHVPVPYTYWPV DTAPIEEKLMVAETSKVLRPVAVVPKEPVNVEELVGISQLSLGDSAGLKLTVEASRQSAFHAKAQGSGSDIVVGKGKKGSSNSIEAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10025822 [exp]	0	1
AT3G48200			unknown protein		Lus10039976 [exp]	4.7	0.8674
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10038279 [exp]	4.8	0.7993
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10000643 [exp]	6.9	0.8109
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10010262 [exp]	11.1	0.8384
AT5G52110		CCB2, HCF208	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10027422 [exp]	11.6	0.8124
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10003465 [exp]	11.6	0.8398
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10038104 [exp]	19.3	0.8204
AT1G76730			NagB/RpiA/CoA transferase-like...		Lus10028565 [exp]	22.1	0.8289
AT2G47210	MYB		myb-like transcription factor ...		Lus10034713 [exp]	23.7	0.8230
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10029270 [exp]	23.9	0.7709

Compare expression of checked genes

Lus10025822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.