Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50920 211 / 2e-62 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 209 / 5e-62 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT1G74310 201 / 8e-59 HOT1, ATHSP101 heat shock protein 101 (.1) AT5G15450 199 / 4e-58 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT4G14670 188 / 2e-55 CLPB2 casein lytic proteinase B2 (.1) AT2G25140 191 / 4e-55 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT5G51070 181 / 8e-52 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT3G45450 97 / 3e-23 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038272 [exp] 226 / 9e-71 AT2G19740 200 / 9e-63 Ribosomal protein L31e family protein (.1) Lus10032544 [exp] 212 / 6e-64 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 205 / 2e-60 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10036017 [exp] 204 / 4e-60 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10021159 [exp] 202 / 9e-60 AT1G74310 1421 / 0.0 heat shock protein 101 (.1) Lus10043197 [exp] 195 / 2e-59 AT5G50920 802 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10030705 [exp] 199 / 4e-58 AT5G15450 1619 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10013191 [exp] 184 / 9e-53 AT5G15450 1605 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10043014 [exp] 177 / 5e-52 AT5G51070 664 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G105900 [exp] 214 / 1e-63 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G105100 [exp] 213 / 5e-63 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G057000 [exp] 202 / 2e-59 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.015G056900 [exp] 201 / 4e-59 AT1G74310 1566 / 0.0 heat shock protein 101 (.1) Potri.017G090600 [exp] 201 / 1e-58 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.004G124800 [exp] 199 / 5e-58 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.012G112000 [exp] 178 / 8e-51 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.015G110000 [exp] 176 / 4e-50 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.006G262700 [exp] 176 / 5e-50 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.005G197400 [exp] 155 / 8e-44 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10025832 pacid=23177613 polypeptide=Lus10025832 locus=Lus10025832.g ID=Lus10025832.BGIv1.0 annot-version=v1.0 ATGCAGAACAAGCTGGATCCTGTTACAGGGCGCCACCAGGAAATTGAAAGGGTAATCCAAATCCTCTGTAAGCGCAAGATATGCAACCCTTGCCTAGTCG GTGACCCCGGAGTTGGCAAGACAGTGATCATCGAAGGCCTAGCTGCAAATATCATCACTCGCCAAGTCCCTCCCAAGCTTCTAGGCAAGAAGATATATGC ATTAGACATGGGACGTCTGATCGCCGGGGCAGCGAATAGAGGAGAATTCGAGGAGAGGCTAATTAAAGTGATTGATGAAGCTAAACAAAGCCAAGGAGTC ATCATTCTGTTCATCGACGAACTGCGTACCTTGGTCGGAGCAGGTGGTAGTGGTGGTAGCGCGTTAGATGCTGCCAACATTCTCAAACCACCACTAACCA GAGGAGAAATCAAGTGCATTGGGGCGCGACGGTGGGAGAGTACAGAAGCTACATCGAAAAAGGACGGAGCTTTGAAGCGGCGGTGTCAGAGCGTGGACGT CCCTGAACCATCTGATGCTCAAACAACGGAGATTCTGAAAGGGCTGCTCCCAAAATACGAGGCCTTTCACGGTGTGCAATACGAGGAAAAGGCTCTGGCC GCCGCCGTTTTGTTGTCTCATCAGTTCATAAACGGGAGCGAGATCCCATCTGAATCGAACCGGCGTGGTTACGGAGTCAGACATCTGCCGGGTAATTTCA ATGGTGACCGGAATTCCCCTAGAATCCGTGACCGCCGACGAGTCCCTTCGGCTTCTCAACATGGAGGAGAAGCTTCAACGACATATAATCGGGCAGGACG AAGCTGTTAA
AA sequence Show only first row Show all	>Lus10025832 pacid=23177613 polypeptide=Lus10025832 locus=Lus10025832.g ID=Lus10025832.BGIv1.0 annot-version=v1.0 MQNKLDPVTGRHQEIERVIQILCKRKICNPCLVGDPGVGKTVIIEGLAANIITRQVPPKLLGKKIYALDMGRLIAGAANRGEFEERLIKVIDEAKQSQGV IILFIDELRTLVGAGGSGGSALDAANILKPPLTRGEIKCIGARRWESTEATSKKDGALKRRCQSVDVPEPSDAQTTEILKGLLPKYEAFHGVQYEEKALA AAVLLSHQFINGSEIPSESNRRGYGVRHLPGNFNGDRNSPRIRDRRRVPSASQHGGEASTTYNRAGRSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10025832 [exp]	0	1
AT5G41020	MYB		myb family transcription facto...		Lus10022932 [exp]	5.1	0.8934
					Lus10034961 [exp]	5.1	0.8598
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10027372 [exp]	6.2	0.8933
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10039713 [exp]	9.8	0.8921
AT5G10520		RBK1	ROP binding protein kinases 1 ...		Lus10002659 [exp]	10.4	0.8915
AT4G18770	MYB	ATMYB98	myb domain protein 98 (.1)		Lus10042111 [exp]	15.5	0.8772
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10007367 [exp]	17.3	0.8707
AT2G45650	MADS	AGL6	AGAMOUS-like 6 (.1)		Lus10015017 [exp]	18.3	0.8653
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10026828 [exp]	20.2	0.7868
AT1G17960			Threonyl-tRNA synthetase (.1)		Lus10030644 [exp]	22.7	0.8799

Compare expression of checked genes

Lus10025832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.