Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44670 72 / 9e-14 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G45060 67 / 6e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 61 / 4e-10 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 60 / 9e-10 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G17680 58 / 5e-09 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12020 57 / 7e-09 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT3G51570 57 / 7e-09 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17890 57 / 1e-08 CHS3, DAR4 CHILLING SENSITIVE 3, DA1-related protein 4 (.1) AT3G25510 56 / 3e-08 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G56540 56 / 3e-08 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038249 [exp] 336 / 2e-107 AT5G17680 445 / 4e-137 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10026201 [exp] 71 / 5e-13 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10014829 [exp] 65 / 3e-11 AT5G17680 441 / 1e-136 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10017418 [exp] 63 / 1e-10 AT5G44510 335 / 1e-96 target of AVRB operation1 (.1) Lus10017420 [exp] 62 / 3e-10 AT1G69550 164 / 1e-42 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10005588 [exp] 61 / 5e-10 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029811 [exp] 53 / 3e-09 AT5G36930 51 / 5e-09 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041078 [exp] 58 / 6e-09 AT5G17680 399 / 6e-126 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 57 / 2e-08 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G030365 [exp] 76 / 2e-15 AT1G69550 92 / 2e-20 disease resistance protein (TIR-NBS-LRR class) (.1) Potri.019G068300 [exp] 74 / 2e-14 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 69 / 1e-12 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 66 / 2e-11 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 64 / 6e-11 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 64 / 7e-11 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070565 [exp] 62 / 3e-10 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070001 [exp] 62 / 3e-10 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 61 / 5e-10 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070479 [exp] 58 / 3e-09 AT5G17680 285 / 2e-80 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10025852 pacid=23177521 polypeptide=Lus10025852 locus=Lus10025852.g ID=Lus10025852.BGIv1.0 annot-version=v1.0 ATGGGCAGGATCGGCAAGACCACTCTAGCAAGATCCATCTTCCAACACTTCTCTACTCGATTCGAAGCTTCAGTATTCATCGAGAATTTCACCGACCAAC TCACCAGAACAGATGTATTCAACTTACAACATCAACTATTGGCAAGGTTGTTAGCTGATGGTCAGAAGAACACACACCAATTAACAACACTCCCTAACCC GACAGTGTTCGTTCGCCTTCGACATAAACGAGTGCTTATTGTCATCGACGATGTGGGTAACGATGTGGGCAATATCGAATCATTGGATGATCTACTAAAG GGGGAGACGTGTGAAACGACAGCTCTATTATTACCAAGGTTGAAAAAACTATCCTTACCGGGTACTCGAATCCTCCCCGATTTCATATGTCGCCTACAAA TTTCGGAGCTTTACTGCCTAGACTGTCCGACGATGATCGAATTCCCAGTCATCCCAACCTTGAGTGTCTTAAGCTTGGGAAACACCATGATTAAGGAAGT TGACATGCTCCACAGATTAAAGGAGTTGTGTTTGACTTCTAACAACCACCCCACCAACCTACCCACTGAAATCTACAAGTTGAGGTTTGTAGAAAGGATT GATTTGTCAAAATGTAGCCACCTTAAGGAATTTCCTGAGATTTTAGAGCCCATGGAAGCTTTGGAAGAGCTTGATTTAAGTGGATGCAGTAATCTGAAGC TATTGAAGAGGTTCCAACGAGTGTTCGATCTATTTGAACTGGCGAGGCTGGACGTGTCAAACTGTAGTGAGCTGACTCATTTGCTGGAGCTTCCTTCGTC GTTGAAATATTTGGATGCATACAATTGCAAGTTACTTGAGAGGATAGAGATGGTTGGCAAACACAATCTCGTCGATACTCGATGGAGGCTGGGTGGACGT TCCAAGTTGGATGACAAGACTTTTATTGATGTTCTATCTCAGGTACGTATCTGCCTCCCCAGTTGTGCTTTGTTGGATCAGAATTTATAA
AA sequence Show only first row Show all	>Lus10025852 pacid=23177521 polypeptide=Lus10025852 locus=Lus10025852.g ID=Lus10025852.BGIv1.0 annot-version=v1.0 MGRIGKTTLARSIFQHFSTRFEASVFIENFTDQLTRTDVFNLQHQLLARLLADGQKNTHQLTTLPNPTVFVRLRHKRVLIVIDDVGNDVGNIESLDDLLK GETCETTALLLPRLKKLSLPGTRILPDFICRLQISELYCLDCPTMIEFPVIPTLSVLSLGNTMIKEVDMLHRLKELCLTSNNHPTNLPTEIYKLRFVERI DLSKCSHLKEFPEILEPMEALEELDLSGCSNLKLLKRFQRVFDLFELARLDVSNCSELTHLLELPSSLKYLDAYNCKLLERIEMVGKHNLVDTRWRLGGR SKLDDKTFIDVLSQVRICLPSCALLDQNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17890		CHS3, DAR4	CHILLING SENSITIVE 3, DA1-rela...		Lus10025852 [exp]	0	1
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10039069 [exp]	2.8	0.9461
AT5G09730		ATBXL3, XYL3, B...	beta-xylosidase 3 (.1)		Lus10025036 [exp]	3.2	0.9118
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10027746 [exp]	5.9	0.8633
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10035516 [exp]	6.9	0.9175
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10010106 [exp]	6.9	0.8931
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031264 [exp]	7.3	0.9369
					Lus10027053 [exp]	8.8	0.8991
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10012778 [exp]	18.3	0.8833
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Lus10021467 [exp]	19.1	0.8397
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10024272 [exp]	20.4	0.9157

Compare expression of checked genes

Lus10025852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.