Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48450 836 / 0 SKS3 SKU5 similar 3 (.1) AT4G12420 746 / 0 SKU5 Cupredoxin superfamily protein (.1.2) AT4G25240 717 / 0 SKS1 SKU5 similar 1 (.1) AT5G51480 693 / 0 SKS2 SKU5 similar 2 (.1) AT1G21860 494 / 2e-170 SKS7 SKU5 similar 7 (.1) AT4G22010 493 / 8e-170 SKS4 SKU5 similar 4 (.1) AT1G21850 493 / 1e-169 SKS8 SKU5 similar 8 (.1) AT3G13390 491 / 1e-168 SKS11 SKU5 similar 11 (.1) AT1G76160 489 / 5e-168 SKS5 SKU5 similar 5 (.1) AT1G55560 489 / 8e-168 SKS14 SKU5 similar 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038239 [exp] 1051 / 0 AT5G48450 858 / 0.0 SKU5 similar 3 (.1) Lus10028921 [exp] 756 / 0 AT4G12420 975 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10032241 [exp] 755 / 0 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10004339 [exp] 754 / 0 AT4G12420 979 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10024604 [exp] 748 / 0 AT4G12420 941 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10031722 [exp] 709 / 0 AT4G25240 897 / 0.0 SKU5 similar 1 (.1) Lus10031143 [exp] 707 / 0 AT4G25240 898 / 0.0 SKU5 similar 1 (.1) Lus10038920 [exp] 672 / 0 AT5G51480 851 / 0.0 SKU5 similar 2 (.1) Lus10027207 [exp] 669 / 0 AT5G51480 840 / 0.0 SKU5 similar 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G177700 [exp] 943 / 0 AT5G48450 885 / 0.0 SKU5 similar 3 (.1) Potri.003G112700 [exp] 762 / 0 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.001G120300 [exp] 751 / 0 AT4G12420 930 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.012G126400 [exp] 720 / 0 AT4G25240 883 / 0.0 SKU5 similar 1 (.1) Potri.015G127200 [exp] 716 / 0 AT4G25240 882 / 0.0 SKU5 similar 1 (.1) Potri.002G021000 [exp] 532 / 0 AT1G75790 670 / 0.0 SKU5 similar 18 (.1) Potri.005G247700 [exp] 504 / 1e-173 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 494 / 3e-170 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.004G180500 [exp] 490 / 1e-168 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.008G032100 [exp] 491 / 2e-168 AT5G48450 461 / 3e-156 SKU5 similar 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10025860 pacid=23177471 polypeptide=Lus10025860 locus=Lus10025860.g ID=Lus10025860.BGIv1.0 annot-version=v1.0 ATGCAAACTCCACTCCTTATATTGCTGCTCTTGCTGCTGACGGCCACAACTAGTTTAGCAGGAGACCCTTATGTCTTCTTCGATTGGACCGTCTCCTACA TCTCCGCTTCCCCTCTTTCCCTCAAACAACAGGTGATTGGCATCAATGGGCAATTCCCAGGACCCGTTCTTAACGTCACTACAAACTGGAACGTTGTTGT TAATGTCAAGAACCAGCTGGATGAGCCACTGCTTCTTACTTGGAATGGAATACAGCATAGGAAGAACTCATGGCAAGATGGTGTTCCGGGGACTAATTGT CCCATTCCTGCTGGATGGAACTGGACTTATTCGTTCCAGGTGAAGGATCAGATTGGGAGTTTCTTCTACTTCCCTTCCTTGAGTTTCCAGCGAGCTGCAG GAGGCTATGGTGGGATCATTGTCAACAATAGGGAAGTTATTGCCTTGCCTTTTCCATTGCCTGACGGAGATATCACCCTCTTCATTGGTGACTGGTACAC CAGAAGACATAAGGATTTAAGGAAAGATGTTGAAAATGGGAAGAATCTTGGTCCTCCTGATGGTATCCTCATGAATGGATTTGGTCCGTACAGGTATGAT CAAGCACTTGTCCAAGAAGGCACTACTTACCAGATAATAAGTGTTGAACCAGGAAAGACGTATCGTTTCCGAGTGCACAATGTGGGAATATCAACCACCT TGAACTTTAGAATACAAAATCACAACTTACTTCTTGTGGAGACAGAAGGTTCGTATACAGTCCAGCAGAATTACACCAACATGGATATCCATGTGGGCCA GTCATATTCGTTCCTAGTGTCGATGGACCAGAATGCTACCACTGATTATTATATCGTTGCTAGTCCGAGATATGTTAACTCATCTACCTGGAACAAAGCT TCTGGGGTTAGCATCCTGCACTACTCCAATTCCCAGGGGCCTGCTTCAGGTCCTCTTCCTGATCCTCCTAATGCATACGATACGTTTTTCTCAATGAATC AAGCAAGATCAATAAGATCAAATGTATCTGCTGGTGCTGCTCGCCCGAATCCACAGGGGTCTTTCAAATATGGCCAGATTACAGTGACAGATGTATATGT GATTGCCAATAGACCAGCAGAGATGATAAATGGAAAATGGATGACCACTCTTAATGGCATTTCTTACTTGCAACCTTCAACGCCTTTGACGCTTGCCCAG CAATACAAGATTCCTGGACTCTATAAGCTCGACTTCCCCAATCAGATGATGAATAGACCTTCAAAGCTAGATACTTCTCTAATAAATGGTACTTTCAAAA GTTTTACTGAGATCATATTCCAGAATAATGATACCTCTGTACAGAGCTATCATATGGACGGATATGCTTTCTTTGTAGTGGGTATGGATTTTGGAGTGTG GACAGATAATAGCAGAGGCACCTACAACAAATGGGATGGCGTTGCTCGCAGCACGATCCAGGTATTCCCTGGAGCTTGGACTGCTGTCCTGGTATACCTA GACAATGCCGGGATGTGGAATCTTCGCGCTGAGAATCTGGACTCATGGTATCTAGGCCAGGAAGTGTATGTAAGCGTAGTAAACCCAGAGGAAGACAAAG GCGAGTTTGGTCTGCCAGATAACGCTATATACTGTGGCTTATTGTCACATTTACAGAAGGACCAAGCTCAAAGATTCAGGTTCTCAACAGCGTCATCTGT TTCAAGTAAGAGCAACCGAATTTTGGTTGTACTACTTGTAGTCGCTGTATATGGAATGGTTGCAAGCAGGCAGCAGTAA
AA sequence Show only first row Show all	>Lus10025860 pacid=23177471 polypeptide=Lus10025860 locus=Lus10025860.g ID=Lus10025860.BGIv1.0 annot-version=v1.0 MQTPLLILLLLLLTATTSLAGDPYVFFDWTVSYISASPLSLKQQVIGINGQFPGPVLNVTTNWNVVVNVKNQLDEPLLLTWNGIQHRKNSWQDGVPGTNC PIPAGWNWTYSFQVKDQIGSFFYFPSLSFQRAAGGYGGIIVNNREVIALPFPLPDGDITLFIGDWYTRRHKDLRKDVENGKNLGPPDGILMNGFGPYRYD QALVQEGTTYQIISVEPGKTYRFRVHNVGISTTLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSYSFLVSMDQNATTDYYIVASPRYVNSSTWNKA SGVSILHYSNSQGPASGPLPDPPNAYDTFFSMNQARSIRSNVSAGAARPNPQGSFKYGQITVTDVYVIANRPAEMINGKWMTTLNGISYLQPSTPLTLAQ QYKIPGLYKLDFPNQMMNRPSKLDTSLINGTFKSFTEIIFQNNDTSVQSYHMDGYAFFVVGMDFGVWTDNSRGTYNKWDGVARSTIQVFPGAWTAVLVYL DNAGMWNLRAENLDSWYLGQEVYVSVVNPEEDKGEFGLPDNAIYCGLLSHLQKDQAQRFRFSTASSVSSKSNRILVVLLVVAVYGMVASRQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10025860 [exp]	0	1
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10019338 [exp]	7.2	0.9271
AT5G48600		ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...		Lus10005240 [exp]	9.5	0.9284
AT1G21730			P-loop containing nucleoside t...		Lus10025688 [exp]	11.0	0.9248
AT3G57060			binding (.1.2)		Lus10039013 [exp]	11.6	0.9259
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10041143 [exp]	12.4	0.8906
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Lus10036151 [exp]	13.5	0.9221
AT3G25100		CDC45	cell division cycle 45 (.1)		Lus10011840 [exp]	14.0	0.9256
AT4G16970			Protein kinase superfamily pro...		Lus10004357 [exp]	14.1	0.9214
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10024105 [exp]	20.2	0.9065
AT1G67040			unknown protein		Lus10033565 [exp]	20.6	0.9180

Compare expression of checked genes

Lus10025860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.